Factsheet for TraesCS3B01G397100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G358400.1	Wheat	nucleus	96.58	96.38
TraesCS3A01G365200.1	Wheat	nucleus	94.23	95.45
HORVU3Hr1G085570.1	Barley	plastid	75.0	76.14
Os01t0850400-01	Rice	nucleus	55.13	62.47
OQU87862	Sorghum	nucleus	52.14	61.15
Zm00001d012379_P001	Maize	nucleus	51.07	59.6
GSMUA_Achr6P33470_001	Banana	nucleus	21.79	45.33
GSMUA_Achr9P03720_001	Banana	nucleus	30.56	44.41
KRG88785	Soybean	nucleus	31.41	41.76
KRH75766	Soybean	nucleus	30.56	40.86
PGSC0003DMT400052395	Potato	nucleus	32.05	39.58
Solyc09g011780.2.1	Tomato	nucleus	32.05	39.47
VIT_08s0007g01540.t01	Wine grape	nucleus	33.55	38.29
PGSC0003DMT400069921	Potato	nucleus	30.56	38.24
Solyc05g052850.2.1	Tomato	nucleus	30.56	38.24
CDX72208	Canola	nucleus	29.91	38.04
Bra007186.1-P	Field mustard	nucleus	30.13	38.01
CDY27271	Canola	nucleus	30.13	37.8
VIT_13s0019g03200.t01	Wine grape	nucleus	30.34	37.57
KRH15016	Soybean	nucleus	30.77	36.64
AT3G55730.1	Thale cress	nucleus	30.34	35.59
KRH73115	Soybean	nucleus	29.27	34.34
CDY20494	Canola	nucleus	26.71	33.97
TraesCS7B01G444000.1	Wheat	nucleus	19.66	31.94
AT2G39880.1	Thale cress	nucleus	25.0	31.88
Bra005006.1-P	Field mustard	nucleus	26.92	31.66
CDX74825	Canola	nucleus	26.5	30.92
TraesCS6B01G201700.1	Wheat	nucleus	19.23	30.72
TraesCS7B01G443800.1	Wheat	nucleus	19.23	30.51
TraesCS7B01G443900.1	Wheat	nucleus	19.23	30.2
TraesCS5B01G157300.1	Wheat	nucleus	21.15	29.55
GSMUA_Achr5P28780_001	Banana	nucleus	24.36	28.72
TraesCS4B01G299000.1	Wheat	nucleus	15.38	27.8
TraesCS1B01G236900.1	Wheat	nucleus	17.73	27.39
TraesCS4B01G052400.2	Wheat	nucleus	13.68	25.7
TraesCS3B01G217100.1	Wheat	nucleus	16.24	24.28
TraesCS4B01G105200.1	Wheat	nucleus	13.89	23.64
TraesCS3B01G473600.1	Wheat	nucleus	14.1	18.64

Protein Annotations

EnsemblPlants:TraesCS3B01G397100.1	EnsemblPlantsGene:TraesCS3B01G397100	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF524	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:627612211..627613864

Molecular Weight (calculated)

49625.9 Da

IEP (calculated)

5.762

GRAVY (calculated)

-0.527

Length

468 amino acids

Sequence
(BLAST)

001: MSSETAVSPQ PLSSSPPTAA VSAHSGPAPP ADEPEAPAPP QPPPHHASPL PAPSVSDETD APTRPQPLPR HPIASSSSPS TAAGETQGPV HPPPQPQMHQ
101: PASPSPSSAE PQTPVQPQPN HSSPPLSGDD DDEDVVITGA LSGAGGAASS AADERVKGPW SPEEDAVLTN LVMRDGARNW TMIARGIPGR SGKSCRLRWC
201: NQLDPQLKRK PFTEEEDQMI ISAHAIHGNK WASIAKLLVG RTDNAIKNHW NSTLRRRYCT GTRCTRSASA EQPMREMSRA VSEERWPLSG PSSFSVMEVK
301: EAPVQTVSES SAGALQIRDI NNCSTEAVDR SYPVRPVATV GAFRPYSLGP VQQMQMEMSS STKFVPTIQA LTPEIAVSKF ADTTCFAADV PNKCGHGCCS
401: AEEQPRNNSL LGPEFKEFID HPPILSSSFA SLVSEISSIA WMNGGLQSSN SGNLVQSNPP APDKLGIV

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.