Factsheet for TraesCS4B01G105200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G102100.1	Wheat	nucleus	96.73	96.03
HORVU4Hr1G017040.2	Barley	nucleus	96.36	95.32
TraesCS4A01G211100.1	Wheat	nucleus	95.64	95.29
Zm00001d004681_P001	Maize	nucleus	53.45	76.96
Zm00001d049079_P001	Maize	nucleus	73.09	72.56
EES09660	Sorghum	nucleus	70.91	70.65
Os11t0207600-00	Rice	nucleus, plastid	61.45	63.3
GSMUA_Achr3P16490_001	Banana	nucleus	35.64	58.33
GSMUA_Achr9P08480_001	Banana	nucleus	47.64	51.17
GSMUA_Achr6P17630_001	Banana	nucleus	41.82	43.73
GSMUA_Achr10P...	Banana	nucleus	40.73	43.08
CDY71713	Canola	nucleus	35.27	42.17
GSMUA_Achr3P18970_001	Banana	nucleus	37.45	39.31
KRH53362	Soybean	nucleus	47.27	39.27
AT4G33450.1	Thale cress	nucleus	35.64	39.2
Bra011441.1-P	Field mustard	nucleus	34.91	38.55
TraesCS4B01G052400.2	Wheat	nucleus	34.91	38.55
KRH64569	Soybean	nucleus	47.27	38.46
CDX68977	Canola	nucleus	34.91	38.4
CDX75353	Canola	nucleus	34.91	38.25
Bra034565.1-P	Field mustard	nucleus	34.91	38.25
CDY28302	Canola	nucleus	34.91	38.25
PGSC0003DMT400063862	Potato	nucleus	41.45	37.75
Solyc04g064540.2.1	Tomato	nucleus	41.82	37.22
VIT_04s0044g01380.t01	Wine grape	nucleus	40.73	37.09
TraesCS3B01G217100.1	Wheat	nucleus	40.0	35.14
TraesCS3B01G473600.1	Wheat	nucleus	37.45	29.1
TraesCS7B01G444000.1	Wheat	nucleus	25.82	24.65
TraesCS7B01G443900.1	Wheat	nucleus	26.18	24.16
TraesCS7B01G443800.1	Wheat	nucleus	25.45	23.73
TraesCS6B01G201700.1	Wheat	nucleus	24.73	23.21
TraesCS4B01G299000.1	Wheat	nucleus	21.09	22.39
TraesCS5B01G157300.1	Wheat	nucleus	24.0	19.7
TraesCS1B01G236900.1	Wheat	nucleus	20.36	18.48
TraesCS3B01G397100.1	Wheat	nucleus	23.64	13.89

Protein Annotations

EnsemblPlants:TraesCS4B01G105200.1	EnsemblPlantsGene:TraesCS4B01G105200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF496	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:112919888..112922283

Molecular Weight (calculated)

29810.7 Da

IEP (calculated)

10.304

GRAVY (calculated)

-0.662

Length

275 amino acids

Sequence
(BLAST)

001: MAASSSTTNT SEGGAKPSSL CPRGHWRPGE DEKLRQLVEK YGPQNWNSIA EKLEGRSGKS CRLRWFNQLD PRINKRPFTE EEEERLLAAH RVHGNKWALI
101: ARHFPGRTDN AVKNHWHVVR ARRSRERCRL LAKAASSTFP SYSYSGGAQL DFASASAGSF CFGFSKPSGG GFFGSPPAAA AVAPSSTPVL FNGYGASGNK
201: SLLSRYSSYS GKQPAAPSSL SIAFSSPRSR EALALDGRGG PDHHNRKDYH VDGDEPLKTK DAPPFIDFLG VGVSS

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.