Factsheet for TraesCS3B01G473600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G432300.2	Wheat	nucleus	93.5	93.5
TraesCS3A01G439500.1	Wheat	nucleus	92.94	92.94
Os08t0435700-00	Rice	nucleus	53.11	72.87
HORVU3Hr1G096010.6	Barley	nucleus	71.47	66.23
Zm00001d032194_P002	Maize	nucleus, plastid	66.38	61.52
GSMUA_Achr11P...	Banana	nucleus	31.64	40.73
TraesCS3B01G217100.1	Wheat	nucleus	34.46	38.98
TraesCS4B01G105200.1	Wheat	nucleus	29.1	37.45
CDY67868	Canola	nucleus	30.79	36.58
TraesCS4B01G052400.2	Wheat	nucleus	25.71	36.55
Bra003995.1-P	Field mustard	nucleus	30.51	36.36
CDY07345	Canola	nucleus	30.51	36.24
OQU80507	Sorghum	nucleus	68.08	35.29
VIT_14s0108g01010.t01	Wine grape	nucleus	45.76	34.03
CDY40941	Canola	nucleus	30.51	33.75
CDX95921	Canola	nucleus	30.23	33.44
Bra004394.1-P	Field mustard	nucleus	30.23	33.44
CDY50737	Canola	nucleus	32.49	33.43
Bra016285.1-P	Field mustard	nucleus	33.33	33.43
CDY46444	Canola	nucleus	33.33	33.43
CDY44993	Canola	nucleus	33.33	33.43
AT1G26780.2	Thale cress	nucleus	33.62	33.15
AT1G69560.2	Thale cress	nucleus	32.2	32.95
Os08t0435725-00	Rice	cytosol	9.04	32.0
KRH50566	Soybean	nucleus	39.27	31.88
Solyc05g007870.1.1	Tomato	nucleus	36.72	31.18
PGSC0003DMT400047415	Potato	nucleus	37.29	30.77
VIT_01s0026g02600.t01	Wine grape	nucleus	38.98	30.2
KRG89586	Soybean	nucleus	40.68	29.63
KRH74887	Soybean	plastid	38.7	29.46
KRH70748	Soybean	nucleus	37.85	28.69
TraesCS4B01G299000.1	Wheat	nucleus	16.38	22.39
TraesCS7B01G444000.1	Wheat	nucleus	17.51	21.53
TraesCS6B01G201700.1	Wheat	nucleus	17.8	21.5
TraesCS7B01G443900.1	Wheat	nucleus	17.8	21.14
TraesCS7B01G443800.1	Wheat	nucleus	17.51	21.02
TraesCS5B01G157300.1	Wheat	nucleus	18.64	19.7
TraesCS1B01G236900.1	Wheat	nucleus	15.54	18.15
TraesCS3B01G397100.1	Wheat	nucleus	18.64	14.1

Protein Annotations

EnsemblPlants:TraesCS3B01G473600.1	EnsemblPlantsGene:TraesCS3B01G473600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF697	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:722587846..722591313

Molecular Weight (calculated)

37665.9 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.393

Length

354 amino acids

Sequence
(BLAST)

001: MPSSSACPPW LVRMMAANDD QASSSSSSKG GGAVLTTGTA TIDTGYRGGG GEGGNAADPQ ESSSSGQSRL AARGHWRPAE DIKLRELVAL YGPQNWNLIA
101: EKLDGRSGKS CRLRWFNQLD PRISKRPFSD DEEERLMAAH RFYGNKWSMI ARLFPGRTDN AVKNHWHVIM ARKYREQSIA YRRRKLNQAV QRTLDSSSGL
201: ASGAGHVDVV GHHHNHLLVA ANDSAIFAEP YGFSFRHCCL SFPAGAAAAS ALEPTFCLFP GPGAGSNSVH DGRLSWPDAM AVRGGAGGGG LYWEPLPAQG
301: DLIGGGHHEM ARFGSDDANG SSAAVFAVTD QAGVHLDGTS RSPTFIDFLG VGAT

Best Arabidopsis Sequence Match ( AT1G26780.2 )
(BLAST)

001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA

Arabidopsis Description

MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.