Factsheet for TraesCS1B01G236900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225200.1	Wheat	nucleus	94.72	94.41
TraesCS1A01G223600.1	Wheat	nucleus	92.41	84.59
HORVU1Hr1G060030.1	Barley	nucleus	80.86	73.35
EES18041	Sorghum	nucleus	48.18	40.9
CDX83109	Canola	nucleus	21.78	40.74
TraesCS4B01G299000.1	Wheat	nucleus	34.65	40.54
Os05t0350900-01	Rice	nucleus	27.06	38.86
Zm00001d037994_P001	Maize	nucleus	43.23	35.5
TraesCS7B01G443800.1	Wheat	nucleus	33.99	34.92
TraesCS6B01G201700.1	Wheat	nucleus	33.66	34.81
TraesCS7B01G444000.1	Wheat	nucleus	33.0	34.72
TraesCS7B01G443900.1	Wheat	nucleus	32.67	33.22
TraesCS5B01G157300.1	Wheat	nucleus	33.99	30.75
CDY43567	Canola	nucleus	21.78	30.41
Zm00001d037999_P001	Maize	nucleus	27.06	28.18
Zm00001d037998_P001	Maize	nucleus	26.73	25.23
TraesCS4B01G052400.2	Wheat	nucleus	19.14	23.29
TraesCS4B01G105200.1	Wheat	nucleus	18.48	20.36
TraesCS3B01G217100.1	Wheat	nucleus	20.13	19.49
TraesCS3B01G397100.1	Wheat	nucleus	27.39	17.73
TraesCS3B01G473600.1	Wheat	nucleus	18.15	15.54
CDX83108	Canola	cytosol	0.99	7.69

Protein Annotations

EnsemblPlants:TraesCS1B01G236900.1	EnsemblPlantsGene:TraesCS1B01G236900	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF907	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:423944149..423945313

Molecular Weight (calculated)

32001.5 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.596

Length

303 amino acids

Sequence
(BLAST)

001: MPDGGGGSDG AGAGAGRIKG SWSPEEDELL RDAVARHGAR NWTVISAEIP GRTGKSCRLR WCNQLSPGVH RRAFTPDEDR LIFELHSKHG NKWATIARKL
101: VGRTDNSVKN HWNSTLRKRR SAAAGNAAGG PVFAPAAAMS FQSVDLTRGA EEDDDDDDDS DASVEPPANA KRPRVDVGGA VPPAVKVDHQ APPPDPPTSL
201: SLSLPGTGVG AVTPPAPPAP VPAPAPVKEA WMESARAMLE QNPWFMEAMK RMVEDEVRRQ MGSVCSIMAS LGRAGAAAAT LPTARADRAE THPAGGRNRR
301: TDG

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.