Factsheet for TraesCS1A01G223600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G225200.1	Wheat	nucleus	88.82	96.71
TraesCS1B01G236900.1	Wheat	nucleus	84.59	92.41
HORVU1Hr1G060030.1	Barley	nucleus	76.44	75.75
EES18041	Sorghum	nucleus	45.32	42.02
Os05t0350900-01	Rice	nucleus	26.28	41.23
CDX83109	Canola	nucleus	19.94	40.74
TraesCS4A01G006100.1	Wheat	nucleus	32.02	38.83
TraesCS4A01G047900.1	Wheat	nucleus	21.75	37.89
Zm00001d037994_P001	Maize	nucleus	40.48	36.31
TraesCS7A01G526600.1	Wheat	nucleus	30.82	35.05
TraesCS7A01G526500.1	Wheat	nucleus	30.82	34.34
TraesCS6A01G173800.1	Wheat	nucleus	30.82	34.23
TraesCS5A01G159600.1	Wheat	nucleus	30.82	30.36
CDY43567	Canola	nucleus	19.64	29.95
Zm00001d037999_P001	Maize	nucleus	25.08	28.52
Zm00001d037998_P001	Maize	nucleus	24.47	25.23
TraesCS4A01G262500.3	Wheat	nucleus	17.52	21.01
TraesCS4A01G211100.1	Wheat	nucleus	17.22	20.65
TraesCS3A01G187800.1	Wheat	nucleus	18.73	19.08
TraesCS3A01G365200.1	Wheat	nucleus	24.17	17.32
TraesCS3A01G439500.1	Wheat	nucleus	17.22	16.1
CDX83108	Canola	cytosol	1.21	10.26

Protein Annotations

EnsemblPlants:TraesCS1A01G223600.1	EnsemblPlantsGene:TraesCS1A01G223600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF907	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
TIGR:cd00167	MapMan:15.5.2.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:394250171..394251166

Molecular Weight (calculated)

35026.8 Da

IEP (calculated)

8.515

GRAVY (calculated)

-0.709

Length

331 amino acids

Sequence
(BLAST)

001: MHNPRGSRSR QTETDAAREG RGGMPDGGGG SDGAGAGAGR IKGSWSPEED ELLRDAVARH GARNWTVISA EIPGRTGKSC RLRWCNQLSP GVHRRAFTPD
101: EDRLIFDLHS KHGNKWATIA RKLVGRTDNS VKNHWNSTLR KRRRAAAAAA TAGNAAGGPA FAPASAMSFQ SVDLTKGGED DYDDDDGDSD SDGSVEPPAS
201: AKRPRVDVVP PAVKVDDRAP PPDPPTSLSL SLPGTGVGAV IPPTPPAPVP APAPAKEPWM ESARAMLEQN PWFMEAMKRM VEDEVRRQMG SVCSIMASLG
301: RAGAAAATLP TARVDRSETH PAGGRDQRTD G

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.