Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G105200.1 | Wheat | nucleus | 95.29 | 95.64 |
| TraesCS4D01G102100.1 | Wheat | nucleus | 94.93 | 94.58 |
| HORVU4Hr1G017040.2 | Barley | nucleus | 94.57 | 93.88 |
| Zm00001d004681_P001 | Maize | nucleus | 51.45 | 74.35 |
| Zm00001d049079_P001 | Maize | nucleus | 70.29 | 70.04 |
| EES09660 | Sorghum | nucleus | 68.48 | 68.48 |
| Os11t0207600-00 | Rice | nucleus, plastid | 61.59 | 63.67 |
| GSMUA_Achr3P16490_001 | Banana | nucleus | 35.14 | 57.74 |
| GSMUA_Achr9P08480_001 | Banana | nucleus | 47.1 | 50.78 |
| GSMUA_Achr6P17630_001 | Banana | nucleus | 41.3 | 43.35 |
| GSMUA_Achr10P... | Banana | nucleus | 40.58 | 43.08 |
| CDY71713 | Canola | nucleus | 34.78 | 41.74 |
| GSMUA_Achr3P18970_001 | Banana | nucleus | 37.32 | 39.31 |
| AT4G33450.1 | Thale cress | nucleus | 35.51 | 39.2 |
| KRH53362 | Soybean | nucleus | 46.38 | 38.67 |
| Bra011441.1-P | Field mustard | nucleus | 34.78 | 38.55 |
| CDX68977 | Canola | nucleus | 34.78 | 38.4 |
| Bra034565.1-P | Field mustard | nucleus | 34.78 | 38.25 |
| CDX75353 | Canola | nucleus | 34.78 | 38.25 |
| CDY28302 | Canola | nucleus | 34.78 | 38.25 |
| KRH64569 | Soybean | nucleus | 46.38 | 37.87 |
| PGSC0003DMT400063862 | Potato | nucleus | 40.58 | 37.09 |
| VIT_04s0044g01380.t01 | Wine grape | nucleus | 40.22 | 36.76 |
| Solyc04g064540.2.1 | Tomato | nucleus | 40.94 | 36.57 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 34.06 | 34.06 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 39.86 | 33.85 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 38.04 | 29.66 |
| TraesCS4A01G047900.1 | Wheat | nucleus | 19.2 | 27.89 |
| TraesCS7A01G526600.1 | Wheat | nucleus | 25.36 | 24.05 |
| TraesCS7A01G526500.1 | Wheat | nucleus | 25.36 | 23.57 |
| TraesCS6A01G173800.1 | Wheat | nucleus | 24.28 | 22.48 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 21.38 | 21.61 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 23.19 | 19.05 |
| TraesCS1A01G223600.1 | Wheat | nucleus | 20.65 | 17.22 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 23.55 | 14.07 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G211100.1 | EnsemblPlantsGene:TraesCS4A01G211100 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF496 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:504789781..504792520
Molecular Weight (calculated)
29882.8 Da
IEP (calculated)
10.010
GRAVY (calculated)
-0.658
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLSSTTNT SEGGGKPASL CPRGHWRPGE DEKLRQLVEK YGPQNWNSIA EKLEGRSGKS CRLRWFNQLD PRINKRPFTE EEEERLLAAH RVHGNKWALI
101: ARHFPGRTDN AVKNHWHVVR ARRSRERCRL LAKAASSTFP SYYSGGAQLD FAGASAGSFC FGFSKPSGGG FFGSPPAAAA VAPSSTPVLF NGYGASGNQS
201: LLSRYSSYLD GGKQPAAPSS HSIAFSSPPS REALALDGRG GPDHQHRKDY HVDGDEPLKT KDAPPFIDFL GVGVSS
101: ARHFPGRTDN AVKNHWHVVR ARRSRERCRL LAKAASSTFP SYYSGGAQLD FAGASAGSFC FGFSKPSGGG FFGSPPAAAA VAPSSTPVLF NGYGASGNQS
201: LLSRYSSYLD GGKQPAAPSS HSIAFSSPPS REALALDGRG GPDHQHRKDY HVDGDEPLKT KDAPPFIDFL GVGVSS
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.