CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049079_P001	Maize	nucleus	91.3	90.97
Zm00001d004681_P001	Maize	nucleus	57.61	83.25
HORVU4Hr1G017040.2	Barley	nucleus	71.74	71.22
TraesCS4B01G105200.1	Wheat	nucleus	70.65	70.91
TraesCS4A01G211100.1	Wheat	nucleus	68.48	68.48
TraesCS4D01G102100.1	Wheat	nucleus	68.48	68.23
GSMUA_Achr3P16490_001	Banana	nucleus	36.96	60.71
Os11t0207600-00	Rice	nucleus, plastid	57.97	59.93
GSMUA_Achr9P08480_001	Banana	nucleus	48.55	52.34
EER93554	Sorghum	nucleus	38.41	44.35
GSMUA_Achr6P17630_001	Banana	nucleus	41.67	43.73
CDY71713	Canola	nucleus	35.87	43.04
EES15780	Sorghum	nucleus	38.04	41.67
GSMUA_Achr10P...	Banana	nucleus	39.13	41.54
AT4G33450.1	Thale cress	nucleus	36.59	40.4
CDX75353	Canola	nucleus	36.23	39.84
CDY28302	Canola	nucleus	36.23	39.84
Bra011441.1-P	Field mustard	nucleus	35.87	39.76
GSMUA_Achr3P18970_001	Banana	nucleus	37.68	39.69
CDX68977	Canola	nucleus	35.87	39.6
Bra034565.1-P	Field mustard	nucleus	35.87	39.44
PGSC0003DMT400063862	Potato	nucleus	43.12	39.4
Solyc04g064540.2.1	Tomato	nucleus	43.84	39.16
EES02759	Sorghum	nucleus	38.41	37.59
KRH53362	Soybean	nucleus	44.93	37.46
KRH64569	Soybean	nucleus	45.65	37.28
VIT_04s0044g01380.t01	Wine grape	nucleus	40.58	37.09
EES02758	Sorghum	nucleus	39.49	35.97
EES02760	Sorghum	nucleus	32.25	33.33
EES13945	Sorghum	nucleus	18.48	22.67
EER90085	Sorghum	nucleus	23.91	21.09
EES04668	Sorghum	nucleus	24.64	20.8
OQU75658	Sorghum	nucleus	21.38	20.7
EER98550	Sorghum	nucleus	24.64	18.58
OQU87862	Sorghum	nucleus	25.72	17.79
EES18041	Sorghum	nucleus	21.38	16.53
OQU80507	Sorghum	nucleus	39.13	15.81

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8071726	UniProt:C5Y1Y9	EnsemblPlants:EES09660	ProteinID:EES09660
ProteinID:EES09660.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF496	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3005G104800	SUPFAM:SSF46689	UniParc:UPI0001A8673B	RefSeq:XP_002450672.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:18945778..18949272

Molecular Weight (calculated)

29660.5 Da

IEP (calculated)

10.280

GRAVY (calculated)

-0.654

Length

276 amino acids

Sequence
(BLAST)

001: MPSSSTTNTS DGAKSSSCPR GHWRPGEDEK LKQLVEKYGP QNWNSIAEKL DGRSGKSCRL RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARH
101: FPGRTDNAVK NHWHVVMARR SRERSRLLAR AASSAASSPS AGGYLFGAGT PATSSLCFGF SKLGGGGSGG GLFSSPAASP PTSLFKSFGT ATGSKGFLGA
201: SFEASGRYNY SGKQLTAPLS ITFASPSEAL GMDIGHHGRH EHHQKDYHAA SGDSADEPLK KKDVPFIDFL GVGVSS

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.