CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041818_P001	Maize	nucleus	74.21	83.11
GSMUA_Achr3P16490_001	Banana	nucleus	33.73	50.6
GSMUA_Achr9P08480_001	Banana	nucleus	41.27	40.62
CDY71713	Canola	nucleus	35.32	38.7
VIT_04s0044g01380.t01	Wine grape	nucleus	46.03	38.41
GSMUA_Achr3P18970_001	Banana	nucleus	39.68	38.17
GSMUA_Achr10P...	Banana	nucleus	39.29	38.08
EER93554	Sorghum	nucleus	36.11	38.08
EES09660	Sorghum	nucleus	41.67	38.04
GSMUA_Achr6P17630_001	Banana	nucleus	38.89	37.26
CDX68977	Canola	nucleus	36.11	36.4
AT4G33450.1	Thale cress	nucleus	35.71	36.0
Bra034565.1-P	Field mustard	nucleus	35.71	35.86
CDX75353	Canola	nucleus	35.71	35.86
CDY28302	Canola	nucleus	35.71	35.86
Bra011441.1-P	Field mustard	nucleus	35.32	35.74
PGSC0003DMT400063862	Potato	nucleus	41.67	34.77
Solyc04g064540.2.1	Tomato	nucleus	42.06	34.3
EES02759	Sorghum	nucleus	38.1	34.04
EES02758	Sorghum	nucleus	38.89	32.34
KRH53362	Soybean	nucleus	42.06	32.02
KRH64569	Soybean	nucleus	42.46	31.66
EES02760	Sorghum	nucleus	33.33	31.46
EES13945	Sorghum	nucleus	19.84	22.22
EER90085	Sorghum	nucleus	26.59	21.41
OQU75658	Sorghum	nucleus	23.41	20.7
EES04668	Sorghum	nucleus	26.59	20.49
EER98550	Sorghum	nucleus	25.0	17.21
EES18041	Sorghum	nucleus	24.21	17.09
OQU87862	Sorghum	nucleus	25.0	15.79
OQU80507	Sorghum	nucleus	36.11	13.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8054118	UniProt:C5YT87	EnsemblPlants:EES15780	ProteinID:EES15780
ProteinID:EES15780.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF496	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3008G063400	SUPFAM:SSF46689	UniParc:UPI0001A87FE3	RefSeq:XP_002441942.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:6822744..6824735

Molecular Weight (calculated)

28118.1 Da

IEP (calculated)

11.092

GRAVY (calculated)

-0.708

Length

252 amino acids

Sequence
(BLAST)

001: MEKSSRVRPS RGHWRPGEDD KLRQLVDKYG PQNWNSIAEN LEGRSGKSCR LRWFNQLDPR INRRPFTAAE EELLLQAHRA HGNRWALISR FFPGRTDNAV
101: KNHWHVVTAR RRRGHHHHHR TLVGDGEQTA TSTGYVAVVP PRHQPPFHHQ YFHFGSCCLP ATTTKMTTTR SLCFAVPAGS GPLGLSSSRA GTYGVVRNCN
201: VPTAAAAVAL LDGHRRHDMS KDHGRRGGDD GGAGAVANRK DVQFFDFLGV GI

Best Arabidopsis Sequence Match ( AT4G33450.1 )
(BLAST)

001: MEMSRGSNSF DNKKPSCQRG HWRPVEDDNL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF
101: PGRTDNAVKN HFHVIMARRK RENFSSTATS TFNQTWHTVL SPSSSLTRLN RSHFGLWRYR KDKSCGLWPY SFVSPPTNGQ FGSSSVSNVH HEIYLERRKS
201: KELVDPQNYT FHAATPDHKM TSNEDGPSMG DDGEKNDVTF IDFLGVGLAS

Arabidopsis Description

ATMYB69MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SZC2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.