CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046632_P001	Maize	nucleus	84.98	87.5
Zm00001d036768_P001	Maize	nucleus	76.68	77.92
TraesCS7B01G444000.1	Wheat	nucleus	68.05	73.96
TraesCS7A01G526600.1	Wheat	nucleus	67.73	72.85
TraesCS7D01G515100.1	Wheat	nucleus	67.41	71.77
TraesCS7D01G515000.1	Wheat	nucleus	66.77	70.13
TraesCS7B01G443800.1	Wheat	nucleus	65.81	69.83
TraesCS7B01G443900.1	Wheat	nucleus	66.45	69.8
TraesCS7A01G526500.1	Wheat	nucleus	65.81	69.36
HORVU7Hr1G116750.3	Barley	nucleus	61.34	65.31
EES04668	Sorghum	nucleus	65.81	63.0
HORVU7Hr1G116760.1	Barley	mitochondrion	65.5	57.58
TraesCS7D01G514800.1	Wheat	nucleus	65.5	57.26
CDX83109	Canola	nucleus	24.6	47.53
CDY43567	Canola	nucleus	28.75	41.47
EER98550	Sorghum	nucleus	46.65	39.89
OQU75658	Sorghum	nucleus	32.91	36.14
EES18041	Sorghum	nucleus	36.42	31.93
EES13945	Sorghum	nucleus	22.04	30.67
EER93554	Sorghum	nucleus	20.45	26.78
EES15780	Sorghum	nucleus	21.41	26.59
EES02760	Sorghum	nucleus	22.04	25.84
EES02759	Sorghum	nucleus	23.0	25.53
EES02758	Sorghum	nucleus	24.28	25.08
EES09660	Sorghum	nucleus	21.09	23.91
OQU87862	Sorghum	nucleus	29.39	23.06
CDX83108	Canola	cytosol	1.6	12.82
OQU80507	Sorghum	nucleus	22.04	10.1

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8083495	UniProt:C5Z6L0	EnsemblPlants:EER90085	ProteinID:EER90085
ProteinID:EER90085.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF896	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3010G201388	SUPFAM:SSF46689	UniParc:UPI0001A89A44	RefSeq:XP_002438718.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:54442696..54443637

Molecular Weight (calculated)

33380.1 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.538

Length

313 amino acids

Sequence
(BLAST)

001: MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ VERRPFTPEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV
101: KNHWNCSLKR KLAVATTAAA VSGSGVVSAD AAAEIEATRP IKRVSLSPDS PSGSGSGSGS RSDRSDLSHG SGSGSGQIYR PVARSGGFEP ADCAMSRPQE
201: DDDPLTSLSL SLPGTDHQRF HHDRAHSQFQ ELPASPPSPS PPSPAAAPPS AYPFSPDFMA AMQELIRTEV QRYMASVGVR AGCGATGGAA DLCMPQLVEG
301: VMRAAAERVG RMQ

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.