Factsheet for PGSC0003DMT400052395

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011780.2.1	Tomato	nucleus	95.25	95.0
KRH75766	Soybean	nucleus	54.88	59.43
KRG88785	Soybean	nucleus	55.15	59.38
VIT_08s0007g01540.t01	Wine grape	nucleus	58.31	53.9
GSMUA_Achr9P03720_001	Banana	nucleus	43.54	51.24
GSMUA_Achr6P33470_001	Banana	nucleus	30.08	50.67
PGSC0003DMT400069921	Potato	nucleus	45.91	46.52
OQU87862	Sorghum	nucleus	39.58	37.59
PGSC0003DMT400020635	Potato	nucleus	24.8	37.45
Os01t0850400-01	Rice	nucleus	40.63	37.29
Zm00001d012379_P001	Maize	nucleus	39.31	37.16
GSMUA_Achr5P28780_001	Banana	nucleus	34.04	32.49
TraesCS3A01G365200.1	Wheat	nucleus	39.31	32.25
TraesCS3B01G397100.1	Wheat	nucleus	39.58	32.05
TraesCS3D01G358400.1	Wheat	nucleus	39.58	31.98
PGSC0003DMT400008569	Potato	nucleus	26.65	31.56
HORVU3Hr1G085570.1	Barley	plastid	37.73	31.02
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	28.76	29.38
PGSC0003DMT400079714	Potato	nucleus	17.15	26.64
PGSC0003DMT400063862	Potato	nucleus	18.21	22.85
PGSC0003DMT400072258	Potato	nucleus	18.47	21.81
PGSC0003DMT400047415	Potato	nucleus	19.0	16.78

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102590968	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1BTB9	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400020338	PGSC:PGSC0003DMG400020338	EnsemblPlants:PGSC0003DMT400052395	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295A0A9	RefSeq:XP_006363093.1	SEG:seg

Description

MYB domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020338]

Coordinates

chr9:+:750581..756745

Molecular Weight (calculated)

41045.6 Da

IEP (calculated)

5.300

GRAVY (calculated)

-0.570

Length

379 amino acids

Sequence
(BLAST)

001: MENDTPEVQE VSVAVDGFHG GGIGDASVGG GGGGGVDGGD EEEVLMLEDG SGSSDQLRKK TADRVKGPWS PEEDAILSRL VSNFGARNWS LIARGIPGRS
101: GKSCRLRWCN QLDPAVKRKP FTDEEDRIIL QAHAIHGNKW ASIARLLPGR TDNAIKNHWN STLRRRCAEH GKLRSDSSNI LDDVSAGKSK ASSEETQSCG
201: DVNSLKAIEG KDVSSQENQV ANHYEDRSQE EVQWSDVAND PRTLFRPVAR ISAFSVYGSL NVPESQLQTP RLIPIQAPDL GISKLLEGAF TDRLVPHQCG
301: HGCCGNVNQE INRSSLLGPE FVDYAEPPSF SSHELAALAT EISNVAWYKS GLENSSIEVN FNPTTRAGCG TSHLPSRQF

Best Arabidopsis Sequence Match ( AT3G09230.1 )
(BLAST)

001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST

Arabidopsis Description

MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.