Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY27271 | Canola | nucleus | 73.68 | 78.82 |
Bra007186.1-P | Field mustard | nucleus | 72.93 | 78.44 |
CDX72208 | Canola | nucleus | 72.18 | 78.26 |
VIT_13s0019g03200.t01 | Wine grape | nucleus | 42.61 | 44.97 |
GSMUA_Achr6P33470_001 | Banana | nucleus | 24.81 | 44.0 |
GSMUA_Achr9P03720_001 | Banana | nucleus | 35.09 | 43.48 |
AT2G39880.1 | Thale cress | nucleus | 39.6 | 43.05 |
Solyc05g052850.2.1 | Tomato | nucleus | 40.1 | 42.78 |
PGSC0003DMT400069921 | Potato | nucleus | 40.1 | 42.78 |
KRH15016 | Soybean | nucleus | 40.6 | 41.22 |
KRH73115 | Soybean | nucleus | 36.34 | 36.34 |
AT3G09230.1 | Thale cress | nucleus | 34.59 | 35.11 |
OQU87862 | Sorghum | nucleus | 35.09 | 35.09 |
Zm00001d012379_P001 | Maize | nucleus | 34.34 | 34.16 |
Os01t0850400-01 | Rice | nucleus | 35.34 | 34.14 |
TraesCS3A01G365200.1 | Wheat | nucleus | 35.84 | 30.95 |
TraesCS3B01G397100.1 | Wheat | nucleus | 35.59 | 30.34 |
GSMUA_Achr5P28780_001 | Banana | nucleus | 30.08 | 30.23 |
AT2G23290.1 | Thale cress | nucleus | 23.31 | 30.1 |
TraesCS3D01G358400.1 | Wheat | nucleus | 35.34 | 30.06 |
AT3G50060.1 | Thale cress | nucleus | 22.56 | 29.9 |
AT5G67300.1 | Thale cress | nucleus | 22.81 | 29.84 |
HORVU3Hr1G085570.1 | Barley | plastid | 34.09 | 29.5 |
AT4G37260.1 | Thale cress | nucleus | 23.31 | 29.06 |
AT5G39700.1 | Thale cress | nucleus | 13.03 | 27.37 |
AT4G33450.1 | Thale cress | nucleus | 15.79 | 25.2 |
AT1G73410.1 | Thale cress | nucleus | 15.29 | 25.1 |
AT1G17950.1 | Thale cress | nucleus | 14.54 | 23.29 |
AT5G17800.1 | Thale cress | nucleus | 17.04 | 21.05 |
AT3G29020.2 | Thale cress | nucleus | 16.04 | 20.98 |
AT1G69560.2 | Thale cress | nucleus | 17.54 | 20.23 |
AT1G26780.2 | Thale cress | nucleus | 16.79 | 18.66 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:824739 | UniProt:A0A178VFK6 | ProteinID:AEE79427.1 | EMBL:AF262734 |
ArrayExpress:AT3G55730 | EnsemblPlantsGene:AT3G55730 | RefSeq:AT3G55730 | TAIR:AT3G55730 | RefSeq:AT3G55730-TAIR-G | EnsemblPlants:AT3G55730.1 |
TAIR:AT3G55730.1 | EMBL:AY136325 | Unigene:At.1704 | EMBL:BT000092 | ProteinID:CAB81598.1 | GO:GO:0000981 |
GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009733 | GO:GO:0009737 |
GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB109 | InterPro:Myb_dom | RefSeq:NP_191132.1 |
ProteinID:OAP03662.1 | PFAM:PF00249 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51294 |
PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | UniProt:Q9LDW5 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
UniParc:UPI00000AC128 | SEG:seg | : | : | : | : |
Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
Coordinates
chr3:-:20681827..20684063
Molecular Weight (calculated)
43538.9 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.619
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.