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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27271 Canola nucleus 73.68 78.82
Bra007186.1-P Field mustard nucleus 72.93 78.44
CDX72208 Canola nucleus 72.18 78.26
VIT_13s0019g03200.t01 Wine grape nucleus 42.61 44.97
GSMUA_Achr6P33470_001 Banana nucleus 24.81 44.0
GSMUA_Achr9P03720_001 Banana nucleus 35.09 43.48
AT2G39880.1 Thale cress nucleus 39.6 43.05
Solyc05g052850.2.1 Tomato nucleus 40.1 42.78
PGSC0003DMT400069921 Potato nucleus 40.1 42.78
KRH15016 Soybean nucleus 40.6 41.22
KRH73115 Soybean nucleus 36.34 36.34
AT3G09230.1 Thale cress nucleus 34.59 35.11
OQU87862 Sorghum nucleus 35.09 35.09
Zm00001d012379_P001 Maize nucleus 34.34 34.16
Os01t0850400-01 Rice nucleus 35.34 34.14
TraesCS3A01G365200.1 Wheat nucleus 35.84 30.95
TraesCS3B01G397100.1 Wheat nucleus 35.59 30.34
GSMUA_Achr5P28780_001 Banana nucleus 30.08 30.23
AT2G23290.1 Thale cress nucleus 23.31 30.1
TraesCS3D01G358400.1 Wheat nucleus 35.34 30.06
AT3G50060.1 Thale cress nucleus 22.56 29.9
AT5G67300.1 Thale cress nucleus 22.81 29.84
HORVU3Hr1G085570.1 Barley plastid 34.09 29.5
AT4G37260.1 Thale cress nucleus 23.31 29.06
AT5G39700.1 Thale cress nucleus 13.03 27.37
AT4G33450.1 Thale cress nucleus 15.79 25.2
AT1G73410.1 Thale cress nucleus 15.29 25.1
AT1G17950.1 Thale cress nucleus 14.54 23.29
AT5G17800.1 Thale cress nucleus 17.04 21.05
AT3G29020.2 Thale cress nucleus 16.04 20.98
AT1G69560.2 Thale cress nucleus 17.54 20.23
AT1G26780.2 Thale cress nucleus 16.79 18.66
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1EntrezGene:824739UniProt:A0A178VFK6ProteinID:AEE79427.1EMBL:AF262734
ArrayExpress:AT3G55730EnsemblPlantsGene:AT3G55730RefSeq:AT3G55730TAIR:AT3G55730RefSeq:AT3G55730-TAIR-GEnsemblPlants:AT3G55730.1
TAIR:AT3G55730.1EMBL:AY136325Unigene:At.1704EMBL:BT000092ProteinID:CAB81598.1GO:GO:0000981
GO:GO:0001135GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139
GO:GO:0006355GO:GO:0006357GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009723GO:GO:0009733GO:GO:0009737
GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0009987GO:GO:0030154GO:GO:0043565
GO:GO:0044212InterPro:Homeobox-like_sfInterPro:IPR017930Symbol:MYB109InterPro:Myb_domRefSeq:NP_191132.1
ProteinID:OAP03662.1PFAM:PF00249PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS51294
PANTHER:PTHR10641PANTHER:PTHR10641:SF524UniProt:Q9LDW5InterPro:SANT/MybSMART:SM00717SUPFAM:SSF46689
UniParc:UPI00000AC128SEG:seg::::
Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
Coordinates
chr3:-:20681827..20684063
Molecular Weight (calculated)
43538.9 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.619
Length
399 amino acids
Sequence
(BLAST)
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.