Factsheet for VIT_13s0067g01360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14928	Soybean	nucleus	51.38	54.62
KRH73284	Soybean	nucleus	50.59	51.82
VIT_18s0001g11170.t01	Wine grape	nucleus	37.15	41.05
VIT_18s0001g09850.t01	Wine grape	nucleus	41.5	33.55
VIT_07s0129g01050.t01	Wine grape	nucleus	41.11	33.33
VIT_03s0180g00210.t01	Wine grape	nucleus	39.53	33.0
VIT_17s0000g01890.t01	Wine grape	nucleus	24.11	27.6
VIT_13s0019g03200.t01	Wine grape	nucleus	34.78	23.28
VIT_08s0007g01540.t01	Wine grape	nucleus	36.76	22.68
VIT_04s0044g01380.t01	Wine grape	nucleus	24.9	20.86
VIT_18s0001g15260.t01	Wine grape	nucleus	24.11	19.0
VIT_08s0056g01190.t01	Wine grape	golgi	26.88	15.25
VIT_01s0026g02600.t01	Wine grape	nucleus	25.3	14.0
VIT_14s0108g01010.t01	Wine grape	nucleus	24.11	12.82

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260493	wikigene:100260493	MapMan:15.5.2.1	ProteinID:CCB49851	ProteinID:CCB49851.1
UniProt:F6HCB3	EMBL:FN595514	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100260493	wikigene:LOC100260493	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF553	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015CA531	ArrayExpress:VIT_13s0067g01360
EnsemblPlantsGene:VIT_13s0067g01360	EnsemblPlants:VIT_13s0067g01360.t01	RefSeq:XP_002272706	RefSeq:XP_002272706.1	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:768216..769082

Molecular Weight (calculated)

27765.7 Da

IEP (calculated)

7.916

GRAVY (calculated)

-0.602

Length

253 amino acids

Sequence
(BLAST)

001: MTLTTGGDRI KGSWSPQEDA SLVKLVEEHG PRNWSLISAG IPGRSGKSCR LRWCNQLSPE VQHRPFSPAE DAVIVQAHAV HGNKWATIAR ILPGRTDNAI
101: KNHWNSTLRR RRVGELSSAS SESNSAMKRP SFDATVSSES DSGLKRQLVG ASPEHNSCDR VKAEPETSLT LSPPGDSVVT LPVGDRVEDA RDEGARITRK
201: EGERCAVEMA DTCLVKIIQR MIAEEVRNYF IALRAEDGLR VRPELDPAAQ NNP

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.