Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
23777608
nucleus: 26035336 plasma membrane: 27800704 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034440_P001 | Maize | mitochondrion, plasma membrane | 88.61 | 88.61 |
| Zm00001d013076_P001 | Maize | plasma membrane | 87.62 | 87.62 |
| EER90739 | Sorghum | cytosol, plastid | 87.38 | 87.38 |
| TraesCS5B01G442100.1 | Wheat | cytosol, golgi, nucleus, unclear | 85.4 | 85.4 |
| TraesCS1D01G264200.1 | Wheat | cytosol | 85.4 | 85.4 |
| TraesCS5D01G446300.2 | Wheat | cytosol | 85.15 | 85.15 |
| TraesCS5A01G439100.2 | Wheat | cytosol, unclear | 85.15 | 85.15 |
| TraesCS1B01G274700.2 | Wheat | cytosol, nucleus | 85.15 | 85.15 |
| Os07t0180900-01 | Rice | nucleus, plasma membrane | 84.9 | 84.69 |
| HORVU5Hr1G105870.1 | Barley | cytosol, plasma membrane | 85.15 | 84.31 |
| TraesCS1A01G354400.1 | Wheat | cytosol, extracellular, golgi, unclear | 83.66 | 83.66 |
| HORVU4Hr1G075710.1 | Barley | mitochondrion | 84.9 | 80.9 |
| GSMUA_Achr4P28500_001 | Banana | cytosol | 21.04 | 75.89 |
| GSMUA_Achr5P03060_001 | Banana | cytosol | 75.99 | 75.62 |
| GSMUA_Achr4P21120_001 | Banana | cytosol | 75.0 | 74.63 |
| PGSC0003DMT400028707 | Potato | cytosol | 68.56 | 70.84 |
| Solyc09g007250.2.1 | Tomato | nucleus | 71.04 | 70.69 |
| PGSC0003DMT400071725 | Potato | cytosol | 71.04 | 70.69 |
| PGSC0003DMT400045381 | Potato | cytosol | 70.3 | 69.78 |
| CDY41596 | Canola | cytosol | 70.05 | 69.7 |
| CDY44721 | Canola | cytosol, extracellular | 70.05 | 69.7 |
| Bra009560.1-P | Field mustard | cytosol | 70.05 | 69.7 |
| AT3G09630.1 | Thale cress | cytosol | 69.8 | 69.46 |
| CDX70339 | Canola | cytosol | 69.8 | 69.46 |
| CDY10418 | Canola | cytosol | 69.8 | 69.29 |
| CDX80842 | Canola | cytosol | 69.55 | 69.21 |
| Bra005749.1-P | Field mustard | cytosol | 69.31 | 68.97 |
| Bra029780.1-P | Field mustard | cytosol | 69.06 | 68.72 |
| AT5G02870.1 | Thale cress | cytosol | 69.06 | 68.55 |
| CDY22192 | Canola | cytosol | 65.84 | 68.03 |
| CDY41301 | Canola | cytosol | 65.84 | 68.03 |
| CDY11231 | Canola | cytosol | 65.84 | 67.86 |
| CDX73989 | Canola | cytosol | 67.57 | 67.24 |
| Bra001302.1-P | Field mustard | cytosol | 67.33 | 67.0 |
| Solyc10g084350.1.1 | Tomato | nucleus | 34.16 | 66.99 |
| GSMUA_Achr4P28490_001 | Banana | nucleus | 10.15 | 65.08 |
| Solyc10g086010.1.1 | Tomato | extracellular | 70.05 | 65.06 |
| Bra034075.1-P | Field mustard | cytosol | 61.14 | 63.5 |
| GSMUA_Achr7P01370_001 | Banana | cytosol | 9.9 | 63.49 |
| GSMUA_Achr2P12650_001 | Banana | plastid | 49.51 | 49.88 |
| Bra006658.1-P | Field mustard | plastid | 9.65 | 39.39 |
| VIT_02s0087g00870.t01 | Wine grape | cytosol | 10.64 | 34.96 |
| CDY07934 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 66.83 | 34.66 |
| KRG89783 | Soybean | plastid | 4.21 | 17.71 |
Protein Annotations
| MapMan:17.1.2.1.2 | Gene3D:3.40.1370.10 | EntrezGene:9272589 | ProteinID:AAP44673.1 | ProteinID:AAT76413.1 | ProteinID:BAH92394.1 |
| ProteinID:BAS86843.1 | ProteinID:EEE60093.1 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR023574 | EnsemblPlantsGene:Os03g0796501 |
| EnsemblPlants:Os03t0796501-00 | PFAM:PF00573 | PFAM:PF14374 | ScanProsite:PS00939 | PANTHER:PTHR19431 | PANTHER:PTHR19431:SF1 |
| UniProt:Q7Y1I5 | InterPro:Ribos_L4_C_dom | InterPro:Ribosomal_L4/L1e | InterPro:Ribosomal_L4/L1e_euk/arc_CS | InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 |
| UniParc:UPI000019C5C1 | RefSeq:XP_015632250.1 | SEG:seg | : | : | : |
Description
Similar to 60S ribosomal protein L4 (L1). (Os03t0796501-00)
Coordinates
chr3:-:33143530..33146079
Molecular Weight (calculated)
44491.2 Da
IEP (calculated)
11.220
GRAVY (calculated)
-0.342
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAARPLVS VKALEGDMAT DSAGIQMPQV LRAPIRPDVV TFTHKLLSCN RRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRRWHRRVNI RLRRIAVASA LAATAVPSLV LARGHRIEGV PEFPLVVSDS IESIEKTAQS IKVLKQIGAY ADAEKTKDSV AIRAGKGKMR
201: NRRYINRKGP LIVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTECA FKKLDEVYGG FDTPALKKKG FVLPRPKMAN ADLSRLINSD
301: EVQSVVKPIN KEVKLREARR NPLKNVAAVL KLNPYFGTAR KMAALAEAAR VKARTEKLDS KRTKLSPEES SKIKAAGKAW YKTMISDSDY TEFENFSKWL
401: GVTQ
101: GGRMFAPTKI WRRWHRRVNI RLRRIAVASA LAATAVPSLV LARGHRIEGV PEFPLVVSDS IESIEKTAQS IKVLKQIGAY ADAEKTKDSV AIRAGKGKMR
201: NRRYINRKGP LIVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTECA FKKLDEVYGG FDTPALKKKG FVLPRPKMAN ADLSRLINSD
301: EVQSVVKPIN KEVKLREARR NPLKNVAAVL KLNPYFGTAR KMAALAEAAR VKARTEKLDS KRTKLSPEES SKIKAAGKAW YKTMISDSDY TEFENFSKWL
401: GVTQ
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.