CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83878
CDX92969
CDX94878
CDX96741
CDY35484
CDY37482
CDY40829
CDY51733
CDY51734
CDY55133

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	CDX83878	AT1G17970.1	21798944
AT3G09630.1	CDX96741	AT1G17970.1	21798944
AT3G09630.1	CDY37482	AT3G13720.1	21798944
AT3G09630.1	CDY51733	AT3G13720.1	21798944
AT3G09630.1	CDY51734	AT3G13720.1	21798944
AT3G09630.1	CDY55133	AT3G13720.1	21798944
AT3G09630.1	CDX92969	AT3G22960.1	21798944
AT3G09630.1	CDX94878	AT3G22960.1	21798944
AT3G09630.1	CDY35484	AT3G22960.1	21798944
AT3G09630.1	CDY40829	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22192	Canola	cytosol	99.74	99.74
Bra034075.1-P	Field mustard	cytosol	93.86	94.34
CDX70339	Canola	cytosol	96.42	92.86
CDX80842	Canola	cytosol	96.42	92.86
CDY10418	Canola	cytosol	95.65	91.89
CDY41596	Canola	cytosol	95.4	91.87
CDY44721	Canola	cytosol, extracellular	95.4	91.87
AT3G09630.1	Thale cress	cytosol	95.4	91.87
CDY11231	Canola	cytosol	92.07	91.84
CDX73989	Canola	cytosol	93.09	89.66
Solyc10g084350.1.1	Tomato	nucleus	43.48	82.52
KRH19796	Soybean	nucleus	82.61	79.75
KRH32387	Soybean	nucleus	81.59	78.77
PGSC0003DMT400045381	Potato	cytosol	79.54	76.41
PGSC0003DMT400028707	Potato	cytosol	75.96	75.96
GSMUA_Achr4P21120_001	Banana	cytosol	78.26	75.37
PGSC0003DMT400071725	Potato	cytosol	78.26	75.37
Solyc09g007250.2.1	Tomato	nucleus	78.01	75.12
GSMUA_Achr5P03060_001	Banana	cytosol	77.75	74.88
GSMUA_Achr4P28490_001	Banana	nucleus	12.02	74.6
GSMUA_Achr7P01370_001	Banana	cytosol	12.02	74.6
Solyc10g086010.1.1	Tomato	extracellular	79.54	71.49
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	71.87	70.78
TraesCS1D01G264200.1	Wheat	cytosol	72.89	70.54
KRG95915	Soybean	endoplasmic reticulum	77.49	70.47
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	72.63	70.3
TraesCS5A01G439100.2	Wheat	cytosol, unclear	72.63	70.3
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	72.63	70.3
TraesCS5D01G446300.2	Wheat	cytosol	72.38	70.05
Zm00001d007824_P001	Maize	plasma membrane	71.87	69.55
Zm00001d013076_P001	Maize	plasma membrane	71.61	69.31
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	72.12	69.12
EER90739	Sorghum	cytosol, plastid	71.36	69.06
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	71.1	68.81
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	70.84	68.56
KXG34535	Sorghum	cytosol	70.59	68.32
Os07t0180900-01	Rice	nucleus, plasma membrane	70.08	67.65
Zm00001d018957_P001	Maize	plasma membrane	69.57	67.49
TraesCS2A01G253600.1	Wheat	cytosol	68.03	66.0
Os03t0796501-00	Rice	nucleus	68.03	65.84
HORVU4Hr1G075710.1	Barley	mitochondrion	71.36	65.8
GSMUA_Achr4P28500_001	Banana	cytosol	18.41	64.29
VIT_15s0045g00110.t01	Wine grape	cytosol	31.46	56.16
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.79	55.56
GSMUA_Achr2P12650_001	Banana	plastid	53.45	52.12
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	91.82	46.08
VIT_00s0208g00020.t01	Wine grape	cytosol	30.43	30.67

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:A0A078HUC8	UniProt:A0A078HUC8	EnsemblPlants:CDY41301	ProteinID:CDY41301
ProteinID:CDY41301.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00072848001	InterPro:IPR023574
PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0004EE4B28	SEG:seg

Description

BnaA01g32180DBnaA01g32180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUC8]

Coordinates

chrLK032495:+:21183..24264

Molecular Weight (calculated)

43067.7 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.328

Length

391 amino acids

Sequence
(BLAST)

001: MAAAAARPLV TVQGLDGDMT TDQSTTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSP AFGNMCRGGR MFAPTKIWRR
101: WHRRVNVNMK RHAIVSAIAA TAVPALVMAR GHKIENVPEM PLVVSDSAEA VEKTAAAIKV LKQVGAYDDA EKAKDSIGIR SGVGKMRNRR YISRKGPLVV
201: YGTEGAKIVK AFRNITGVEL CHVERLNLLK LAPGGHLGRF VIWTKSAFEK LEGIYGSFEK PSEKKKGYVL PRAKMVNADL ARIINSDEVQ SVVKPIKKDA
301: KRAVMKKNPL KNLNVMLKLN PYAKTAKRMS LLAEAQRVKA KKEKLAKKRK TVTKEEALAI KAAGKSWYQT MISDSDYTEF DNFTKWLGAS Q

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.