Factsheet for GSMUA_Achr2P12650_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P23200_001
GSMUA_Achr2P17520_001
GSMUA_Achr3P29390_001
GSMUA_Achr4P11130_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P09070_001
GSMUA_Achr7P14310_001
GSMUA_Achr7P14320_001
GSMUA_Achr7P16760_001
GSMUA_Achr9P21480_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	GSMUA_Achr1P23200_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr3P29390_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr4P11130_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr9P21480_001	AT1G17970.1	21798944
AT3G09630.1	GSMUA_Achr7P09070_001	AT3G13720.1	21798944
AT3G09630.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT3G09630.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT5G02870.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT5G02870.1	GSMUA_Achr7P14310_001	AT5G58720.1	21798944
AT5G02870.1	GSMUA_Achr7P14320_001	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03060_001	Banana	cytosol	62.34	61.58
GSMUA_Achr4P21120_001	Banana	cytosol	62.09	61.33
GSMUA_Achr4P28500_001	Banana	cytosol	15.46	55.36
CDY41301	Canola	cytosol	52.12	53.45
CDY22192	Canola	cytosol	52.12	53.45
Solyc09g007250.2.1	Tomato	nucleus	53.12	52.46
PGSC0003DMT400045381	Potato	cytosol	52.87	52.09
Zm00001d013076_P001	Maize	plasma membrane	52.12	51.73
Bra009560.1-P	Field mustard	cytosol	52.37	51.72
CDX70339	Canola	cytosol	52.37	51.72
PGSC0003DMT400071725	Potato	cytosol	52.37	51.72
CDY11231	Canola	cytosol	50.37	51.53
Bra005749.1-P	Field mustard	cytosol	52.12	51.48
CDY10418	Canola	cytosol	52.12	51.35
AT3G09630.1	Thale cress	cytosol	51.87	51.23
Bra034075.1-P	Field mustard	cytosol	49.63	51.16
PGSC0003DMT400028707	Potato	cytosol	49.88	51.15
EER90739	Sorghum	cytosol, plastid	51.37	50.99
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	51.37	50.99
CDX80842	Canola	cytosol	51.62	50.99
AT5G02870.1	Thale cress	cytosol	51.62	50.86
CDY44721	Canola	cytosol, extracellular	51.12	50.49
CDY41596	Canola	cytosol	50.87	50.25
TraesCS1D01G264200.1	Wheat	cytosol	50.37	50.0
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	50.37	50.0
Os07t0180900-01	Rice	nucleus, plasma membrane	50.37	49.88
Bra029780.1-P	Field mustard	cytosol	50.37	49.75
TraesCS5D01G446300.2	Wheat	cytosol	50.12	49.75
Zm00001d007824_P001	Maize	plasma membrane	50.12	49.75
TraesCS5A01G439100.2	Wheat	cytosol, unclear	50.12	49.75
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	50.12	49.75
Zm00001d018957_P001	Maize	plasma membrane	49.88	49.63
KXG34535	Sorghum	cytosol	49.88	49.51
Os03t0796501-00	Rice	nucleus	49.88	49.51
Solyc10g086010.1.1	Tomato	extracellular	53.12	48.97
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	49.63	48.77
CDX73989	Canola	cytosol	49.38	48.77
Bra001302.1-P	Field mustard	cytosol	49.13	48.52
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	48.63	48.27
TraesCS2A01G253600.1	Wheat	cytosol	46.88	46.65
HORVU4Hr1G075710.1	Barley	mitochondrion	49.13	46.46
Solyc10g084350.1.1	Tomato	nucleus	23.44	45.63
GSMUA_Achr7P01370_001	Banana	cytosol	5.74	36.51
GSMUA_Achr4P28490_001	Banana	nucleus	5.49	34.92
Bra006658.1-P	Field mustard	plastid	6.73	27.27
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	48.38	24.9
KRG89783	Soybean	plastid	4.24	17.71

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G12650_001	EnsemblPlants:GSMUA_Achr2P12650_001
EnsemblPlants:GSMUA_Achr2T12650_001	InterPro:IPR023574	UniProt:M0S7F6	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939
PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166	UniParc:UPI0002966C22	SEG:seg	:	:	:

Description

60S ribosomal protein L4-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G12650_001]

Coordinates

chr2:+:15048880..15052786

Molecular Weight (calculated)

43925.4 Da

IEP (calculated)

10.444

GRAVY (calculated)

-0.230

Length

401 amino acids

Sequence
(BLAST)

001: MAAVRPLVTV QPLEGHMATN ALAGVPRPDV LKAPMRPDVV RFVHASLSRN SRQPCAVSKH AGHQTSAESC GVPAAPSPVS PASPAAEHTA PARVPSATCA
101: AAAVCSPPTK TWRRWHRHVN VNIRRYATAS ALAASAVPSL VLARGHRIES VPEFLLVVSD TAEGVEKTAS AIKILKQVGA VPDAEKARDS QGIRPGMRKM
201: RNRGYIFRMG PLIVYGNIPM SSALNLVELA SGDHIDRLVI LTYHPYTLKL YGENPKLNSM FGTFDKSSEK KKGYVLLRSK MHNADLSMII NSDEVQLVVQ
301: PIKKDVKRHT LKRNPLKNLY TLLKLNPYLD KKRTQLPKEE AAAIKAAGPA RYKTMISDSE CLVFSISFTF IESTSDDHRM QVEPTESQCP VHVRRITLTT
401: A

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.