Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G264200.1 | Wheat | cytosol | 99.75 | 99.75 |
| TraesCS5B01G442100.1 | Wheat | cytosol, golgi, nucleus, unclear | 99.26 | 99.26 |
| TraesCS1A01G354400.1 | Wheat | cytosol, extracellular, golgi, unclear | 97.77 | 97.77 |
| HORVU5Hr1G105870.1 | Barley | cytosol, plasma membrane | 98.02 | 97.06 |
| HORVU4Hr1G075710.1 | Barley | mitochondrion | 98.02 | 93.4 |
| Zm00001d034440_P001 | Maize | mitochondrion, plasma membrane | 85.4 | 85.4 |
| Zm00001d013076_P001 | Maize | plasma membrane | 85.4 | 85.4 |
| Os03t0796501-00 | Rice | nucleus | 85.15 | 85.15 |
| EER90739 | Sorghum | cytosol, plastid | 84.9 | 84.9 |
| GSMUA_Achr5P03060_001 | Banana | cytosol | 75.74 | 75.37 |
| GSMUA_Achr4P21120_001 | Banana | cytosol | 75.0 | 74.63 |
| Bra009560.1-P | Field mustard | cytosol | 74.01 | 73.65 |
| AT3G09630.1 | Thale cress | cytosol | 74.01 | 73.65 |
| CDY44721 | Canola | cytosol, extracellular | 74.01 | 73.65 |
| CDX70339 | Canola | cytosol | 73.76 | 73.4 |
| CDY10418 | Canola | cytosol | 73.76 | 73.22 |
| AT5G02870.1 | Thale cress | cytosol | 73.76 | 73.22 |
| CDY41596 | Canola | cytosol | 73.51 | 73.15 |
| CDX80842 | Canola | cytosol | 73.27 | 72.91 |
| Bra029780.1-P | Field mustard | cytosol | 73.02 | 72.66 |
| CDY41301 | Canola | cytosol | 70.3 | 72.63 |
| CDY22192 | Canola | cytosol | 70.3 | 72.63 |
| Bra005749.1-P | Field mustard | cytosol | 72.77 | 72.41 |
| GSMUA_Achr4P28500_001 | Banana | cytosol | 20.05 | 72.32 |
| CDX73989 | Canola | cytosol | 72.52 | 72.17 |
| PGSC0003DMT400028707 | Potato | cytosol | 69.8 | 72.12 |
| Bra001302.1-P | Field mustard | cytosol | 72.28 | 71.92 |
| CDY11231 | Canola | cytosol | 69.55 | 71.68 |
| Solyc09g007250.2.1 | Tomato | nucleus | 72.03 | 71.67 |
| PGSC0003DMT400071725 | Potato | cytosol | 71.78 | 71.43 |
| PGSC0003DMT400045381 | Potato | cytosol | 71.29 | 70.76 |
| Solyc10g084350.1.1 | Tomato | nucleus | 34.9 | 68.45 |
| Bra034075.1-P | Field mustard | cytosol | 65.84 | 68.38 |
| GSMUA_Achr7P01370_001 | Banana | cytosol | 10.64 | 68.25 |
| GSMUA_Achr4P28490_001 | Banana | nucleus | 10.4 | 66.67 |
| Solyc10g086010.1.1 | Tomato | extracellular | 71.29 | 66.21 |
| GSMUA_Achr2P12650_001 | Banana | plastid | 49.75 | 50.12 |
| Bra006658.1-P | Field mustard | plastid | 9.9 | 40.4 |
| VIT_02s0087g00870.t01 | Wine grape | cytosol | 11.39 | 37.4 |
| CDY07934 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 70.79 | 36.71 |
| KRG89783 | Soybean | plastid | 3.71 | 15.62 |
Protein Annotations
| MapMan:17.1.2.1.2 | Gene3D:3.40.1370.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR023574 |
| PFAM:PF00573 | PFAM:PF14374 | ScanProsite:PS00939 | PANTHER:PTHR19431 | PANTHER:PTHR19431:SF1 | InterPro:Ribos_L4_C_dom |
| InterPro:Ribosomal_L4/L1e | InterPro:Ribosomal_L4/L1e_euk/arc_CS | InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 | EnsemblPlantsGene:TraesCS1B01G274700 | EnsemblPlants:TraesCS1B01G274700.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:482164043..482166147
Molecular Weight (calculated)
44223.8 Da
IEP (calculated)
11.282
GRAVY (calculated)
-0.356
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTARPLVS VKALDGDMAT DAAGVPMPHV MKAPIRPDVI TFVHRLVSCN SRQPYAVSRK AGHQTSAESW GTGRAVSRIP RVGGGGTHRA GQGAFGNMCR
101: GGRMFAPTRI WRKWHRRVNV RLRRVAVASA LAATAVPAIV TARGHRIESV PEFPLVVSDS AEGIEKTSQA IKVLKQLGAY ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LIVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLDEVYGS FEASSSKKKG FVLPRPKMTN ADLGRLINSD
301: EVQSVVKPIN KEVKRREARK NPLKNAAAVL KLNPYFGTAR RMAVLAEAAR VKARKEKINS KRTKLSAEEA SKIKAAGKAW YQTMISDSDY TEFDVFSKWL
401: GVSQ
101: GGRMFAPTRI WRKWHRRVNV RLRRVAVASA LAATAVPAIV TARGHRIESV PEFPLVVSDS AEGIEKTSQA IKVLKQLGAY ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LIVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLDEVYGS FEASSSKKKG FVLPRPKMTN ADLGRLINSD
301: EVQSVVKPIN KEVKRREARK NPLKNAAAVL KLNPYFGTAR RMAVLAEAAR VKARKEKINS KRTKLSAEEA SKIKAAGKAW YQTMISDSDY TEFDVFSKWL
401: GVSQ
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Arabidopsis Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.