Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41301 | Canola | cytosol | 91.87 | 95.4 |
| CDY22192 | Canola | cytosol | 91.63 | 95.14 |
| AT5G02870.1 | Thale cress | cytosol | 95.32 | 95.09 |
| CDY41596 | Canola | cytosol | 94.58 | 94.58 |
| CDY44721 | Canola | cytosol, extracellular | 94.58 | 94.58 |
| Bra029780.1-P | Field mustard | cytosol | 93.1 | 93.1 |
| CDX73989 | Canola | cytosol | 92.36 | 92.36 |
| Bra001302.1-P | Field mustard | cytosol | 92.12 | 92.12 |
| Bra034075.1-P | Field mustard | cytosol | 86.7 | 90.49 |
| KRH19796 | Soybean | nucleus | 83.74 | 83.95 |
| Solyc10g084350.1.1 | Tomato | nucleus | 42.36 | 83.5 |
| KRH32387 | Soybean | nucleus | 82.76 | 82.96 |
| PGSC0003DMT400028707 | Potato | cytosol | 78.33 | 81.33 |
| PGSC0003DMT400045381 | Potato | cytosol | 80.54 | 80.34 |
| GSMUA_Achr4P21120_001 | Banana | cytosol | 79.8 | 79.8 |
| Solyc09g007250.2.1 | Tomato | nucleus | 79.31 | 79.31 |
| PGSC0003DMT400071725 | Potato | cytosol | 79.06 | 79.06 |
| GSMUA_Achr5P03060_001 | Banana | cytosol | 78.82 | 78.82 |
| GSMUA_Achr4P28490_001 | Banana | nucleus | 11.82 | 76.19 |
| GSMUA_Achr7P01370_001 | Banana | cytosol | 11.82 | 76.19 |
| GSMUA_Achr4P28500_001 | Banana | cytosol | 20.94 | 75.89 |
| KRH67633 | Soybean | endoplasmic reticulum, mitochondrion | 73.89 | 75.57 |
| Solyc10g086010.1.1 | Tomato | extracellular | 80.3 | 74.94 |
| KRG95915 | Soybean | endoplasmic reticulum | 78.82 | 74.42 |
| TraesCS1B01G274700.2 | Wheat | cytosol, nucleus | 73.65 | 74.01 |
| Zm00001d007824_P001 | Maize | plasma membrane | 73.4 | 73.76 |
| TraesCS5B01G442100.1 | Wheat | cytosol, golgi, nucleus, unclear | 73.4 | 73.76 |
| TraesCS5A01G439100.2 | Wheat | cytosol, unclear | 73.4 | 73.76 |
| TraesCS1D01G264200.1 | Wheat | cytosol | 73.4 | 73.76 |
| TraesCS5D01G446300.2 | Wheat | cytosol | 73.15 | 73.51 |
| EER90739 | Sorghum | cytosol, plastid | 73.15 | 73.51 |
| Zm00001d013076_P001 | Maize | plasma membrane | 72.91 | 73.27 |
| KXG34535 | Sorghum | cytosol | 72.66 | 73.02 |
| HORVU5Hr1G105870.1 | Barley | cytosol, plasma membrane | 73.15 | 72.79 |
| Zm00001d034440_P001 | Maize | mitochondrion, plasma membrane | 72.17 | 72.52 |
| TraesCS1A01G354400.1 | Wheat | cytosol, extracellular, golgi, unclear | 71.92 | 72.28 |
| Zm00001d018957_P001 | Maize | plasma membrane | 71.67 | 72.21 |
| Os07t0180900-01 | Rice | nucleus, plasma membrane | 71.92 | 72.1 |
| Os03t0796501-00 | Rice | nucleus | 69.46 | 69.8 |
| TraesCS2A01G253600.1 | Wheat | cytosol | 69.21 | 69.73 |
| HORVU4Hr1G075710.1 | Barley | mitochondrion | 72.66 | 69.58 |
| VIT_15s0045g00110.t01 | Wine grape | cytosol | 30.79 | 57.08 |
| KRG96019 | Soybean | endoplasmic reticulum, extracellular | 12.56 | 56.67 |
| GSMUA_Achr2P12650_001 | Banana | plastid | 51.23 | 51.87 |
| CDY07934 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 91.38 | 47.63 |
| VIT_00s0208g00020.t01 | Wine grape | cytosol | 29.8 | 31.19 |
Protein Annotations
| MapMan:17.1.2.1.2 | Gene3D:3.40.1370.10 | EntrezGene:820120 | UniProt:A0A178VDX8 | ProteinID:AAF23293.1 | ProteinID:AEE74789.1 |
| ArrayExpress:AT3G09630 | EnsemblPlantsGene:AT3G09630 | RefSeq:AT3G09630 | TAIR:AT3G09630 | RefSeq:AT3G09630-TAIR-G | EnsemblPlants:AT3G09630.1 |
| TAIR:AT3G09630.1 | EMBL:AY056781 | Unigene:At.24636 | EMBL:BT002438 | EMBL:BT008495 | ncoils:Coil |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 |
| GO:GO:0022626 | GO:GO:0030312 | GO:GO:0030529 | GO:GO:0042788 | InterPro:IPR023574 | RefSeq:NP_187574.1 |
| ProteinID:OAP04429.1 | PFAM:PF00573 | PFAM:PF14374 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00939 | PANTHER:PTHR19431 | PANTHER:PTHR19431:SF1 | UniProt:Q9SF40 | InterPro:Ribos_L4_C_dom |
| InterPro:Ribosomal_L4/L1e | InterPro:Ribosomal_L4/L1e_euk/arc_CS | InterPro:Ribosomal_L4_dom_sf | SUPFAM:SSF52166 | UniParc:UPI0000000E2F | SEG:seg |
Description
RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
Coordinates
chr3:+:2953693..2955738
Molecular Weight (calculated)
44704.7 Da
IEP (calculated)
11.041
GRAVY (calculated)
-0.379
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.