Factsheet for Zm00001d018957_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d011636_P001
Zm00001d017254_P002
Zm00001d018961_P002
Zm00001d025208_P002
Zm00001d034443_P001
Zm00001d037747_P001
Zm00001d038909_P001
Zm00001d039321_P008
Zm00001d039455_P002
Zm00001d043784_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Zm00001d011636_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d038909_P001	AT1G17970.1	21798944
AT3G09630.1	Zm00001d043784_P002	AT1G17970.1	21798944
AT3G09630.1	Zm00001d037747_P001	AT3G13720.1	21798944
AT3G09630.1	Zm00001d039455_P002	AT3G13720.1	21798944
AT3G09630.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT3G09630.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT5G02870.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT5G02870.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT5G02870.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT5G02870.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007824_P001	Maize	plasma membrane	96.03	95.79
KXG34535	Sorghum	cytosol	95.53	95.3
Os07t0180900-01	Rice	nucleus, plasma membrane	89.08	88.64
Zm00001d013076_P001	Maize	plasma membrane	87.1	86.88
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	86.85	86.63
TraesCS2A01G253600.1	Wheat	cytosol	84.86	84.86
GSMUA_Achr5P03060_001	Banana	cytosol	77.67	77.09
GSMUA_Achr4P21120_001	Banana	cytosol	77.42	76.85
GSMUA_Achr4P28500_001	Banana	cytosol	20.84	75.0
GSMUA_Achr7P01370_001	Banana	cytosol	11.41	73.02
GSMUA_Achr4P28490_001	Banana	nucleus	11.41	73.02
AT3G09630.1	Thale cress	cytosol	72.21	71.67
CDY44721	Canola	cytosol, extracellular	72.21	71.67
CDY41596	Canola	cytosol	72.21	71.67
PGSC0003DMT400028707	Potato	cytosol	69.23	71.36
Bra009560.1-P	Field mustard	cytosol	71.71	71.18
AT5G02870.1	Thale cress	cytosol	71.71	71.01
CDX70339	Canola	cytosol	71.46	70.94
CDY10418	Canola	cytosol	71.46	70.76
Bra029780.1-P	Field mustard	cytosol	71.22	70.69
Bra005749.1-P	Field mustard	cytosol	70.97	70.44
CDX80842	Canola	cytosol	70.72	70.2
PGSC0003DMT400045381	Potato	cytosol	70.72	70.02
CDX73989	Canola	cytosol	70.22	69.7
CDY41301	Canola	cytosol	67.49	69.57
CDY22192	Canola	cytosol	67.49	69.57
PGSC0003DMT400071725	Potato	cytosol	69.98	69.46
Bra001302.1-P	Field mustard	cytosol	69.98	69.46
Solyc10g084350.1.1	Tomato	nucleus	35.48	69.42
Solyc09g007250.2.1	Tomato	nucleus	69.73	69.21
CDY11231	Canola	cytosol	67.25	69.13
Bra034075.1-P	Field mustard	cytosol	63.52	65.81
Solyc10g086010.1.1	Tomato	extracellular	70.47	65.29
GSMUA_Achr2P12650_001	Banana	plastid	49.63	49.88
Bra006658.1-P	Field mustard	plastid	9.93	40.4
VIT_02s0087g00870.t01	Wine grape	cytosol	11.66	38.21
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	68.73	35.56
KRG89783	Soybean	plastid	4.22	17.71

Protein Annotations

EntrezGene:100382075	MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EMBL:BT063074	UniProt:C0P455	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR023574	ProteinID:ONM51727.1	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939
PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166	UniParc:UPI0001948BE8	EnsemblPlantsGene:Zm00001d018957	EnsemblPlants:Zm00001d018957_P001	EnsemblPlants:Zm00001d018957_T001	SEG:seg

Description

60S ribosomal protein L4-1

Coordinates

chr7:+:10573779..10577759

Molecular Weight (calculated)

44295.1 Da

IEP (calculated)

11.322

GRAVY (calculated)

-0.414

Length

403 amino acids

Sequence
(BLAST)

001: MVAVNRPLVS VKALEGDMVT DAPGIALPPV FGAPIRPDVV RFTHKLLSCN KRQPYAVSRR AGHQTSAESW GTGRAVSRIP RVPGGGTHRA GQGAFGNMCR
101: GGRMFAPTKI WRKWHRRVNI NLRRVAVASA LAATAVPALV QARGHRIESV PEMPLVISDS AESIEKTSQA LKILKQIGAH ADAEKAKDSV GIRPGKGKMR
201: NRRYINRKGP LIVYGTEGSK VVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTQSA FNKLEEVYGS YDAPSQKKKG FVLPRPKMSN ADLGRIINSD
301: EVQSVVKPLN KEVKRREKRK NPLKNMAAVL KLNPYLGTAR KMATLAEAAR VKARKAKLDS KRTKLTPETA KVKAAGKAWY KTMVSDSDYT EFENFSKWLG
401: VTQ

Best Arabidopsis Sequence Match ( AT3G09630.2 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE ALAIKAAGKS WYKTMISDSD YTEFDNFTKW
401: LGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.