Factsheet for HORVU4Hr1G075710.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU1Hr1G082970.1
HORVU2Hr1G050140.1
HORVU2Hr1G069400.8
HORVU3Hr1G018940.2
HORVU3Hr1G030600.8
HORVU3Hr1G064370.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	HORVU1Hr1G082970.1	AT1G17970.1	21798944
AT3G09630.1	HORVU3Hr1G064370.1	AT1G17970.1	21798944
AT3G09630.1	HORVU1Hr1G028520.1	AT3G13720.1	21798944
AT3G09630.1	HORVU3Hr1G018940.2	AT3G13720.1	21798944
AT3G09630.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944
AT5G02870.1	HORVU2Hr1G069400.8	AT5G22310.1	21798944
AT5G02870.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	94.34	98.04
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	93.4	98.02
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	93.16	97.77
TraesCS5A01G439100.2	Wheat	cytosol, unclear	93.16	97.77
TraesCS1D01G264200.1	Wheat	cytosol	93.16	97.77
TraesCS5D01G446300.2	Wheat	cytosol	92.92	97.52
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	92.22	96.78
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	81.37	85.4
Zm00001d013076_P001	Maize	plasma membrane	80.9	84.9
Os03t0796501-00	Rice	nucleus	80.9	84.9
EER90739	Sorghum	cytosol, plastid	80.42	84.41
GSMUA_Achr5P03060_001	Banana	cytosol	71.46	74.63
GSMUA_Achr4P21120_001	Banana	cytosol	70.75	73.89
GSMUA_Achr4P28500_001	Banana	cytosol	19.34	73.21
AT3G09630.1	Thale cress	cytosol	69.58	72.66
Bra009560.1-P	Field mustard	cytosol	69.34	72.41
CDY44721	Canola	cytosol, extracellular	69.34	72.41
AT5G02870.1	Thale cress	cytosol	69.34	72.24
CDY10418	Canola	cytosol	69.34	72.24
CDX70339	Canola	cytosol	69.1	72.17
CDY41596	Canola	cytosol	69.1	72.17
CDX80842	Canola	cytosol	68.63	71.67
CDX73989	Canola	cytosol	68.4	71.43
CDY41301	Canola	cytosol	65.8	71.36
CDY22192	Canola	cytosol	65.8	71.36
Bra001302.1-P	Field mustard	cytosol	68.16	71.18
Bra005749.1-P	Field mustard	cytosol	68.16	71.18
Bra029780.1-P	Field mustard	cytosol	68.16	71.18
CDY11231	Canola	cytosol	65.09	70.41
Solyc09g007250.2.1	Tomato	nucleus	67.22	70.2
PGSC0003DMT400028707	Potato	cytosol	64.62	70.08
PGSC0003DMT400071725	Potato	cytosol	66.98	69.95
PGSC0003DMT400045381	Potato	cytosol	66.51	69.29
Solyc10g084350.1.1	Tomato	nucleus	33.02	67.96
Bra034075.1-P	Field mustard	cytosol	61.56	67.1
GSMUA_Achr7P01370_001	Banana	cytosol	9.91	66.67
Solyc10g086010.1.1	Tomato	extracellular	66.98	65.29
GSMUA_Achr4P28490_001	Banana	nucleus	9.67	65.08
GSMUA_Achr2P12650_001	Banana	plastid	46.46	49.13
Bra006658.1-P	Field mustard	plastid	9.43	40.4
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	67.45	36.71
VIT_02s0087g00870.t01	Wine grape	cytosol	10.14	34.96
KRG89783	Soybean	plastid	3.54	15.62

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	UniProt:A0A287PPR0	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G075710
EnsemblPlants:HORVU4Hr1G075710.1	InterPro:IPR023574	PFAM:PF00573	PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431
PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166
UniParc:UPI000B487E81	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:599032193..599035023

Molecular Weight (calculated)

46086.9 Da

IEP (calculated)

11.397

GRAVY (calculated)

-0.317

Length

424 amino acids

Sequence
(BLAST)

001: LSPRRRTSSL SPAAAAAAAA MATTARPLVS VKALEGDMAT DAAGVPMPHV MTAPIRPDVI TFVHRLVSCN SRQPYAVSRK AGHQTSAESW GTGRAVSRIP
101: RVGGGGTHRA GQGAFGNMCR GGRMFAPTRI WRKWHRRVNI RLRRVAVASA LAATAVPAIV TARGHRIEGV PEFPLVVSDS AEGIEKTSQA IKVLEQLGAF
201: ADAEKAKESV GIRPGKGKMR NRRYINRKGP LIVYGTEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLDEVYGS FEASSSKKKG
301: FVLPRPKMTN ADLGRLINSD EVQSVVKPIN KEVKRREARK NPLKNAAAVL KLNPYFGTAR RMAVLAEAAR VKARKDKINS KRTKLSAEEA SKIKAAGKAW
401: YQTMISDSDY TEFDVFSKWL GVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.