Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G085300.1 | Wheat | nucleus | 62.4 | 58.55 |
| TraesCS5A01G072600.1 | Wheat | nucleus | 56.98 | 58.1 |
| TraesCS5B01G078400.1 | Wheat | nucleus | 60.85 | 57.3 |
| HORVU5Hr1G019040.1 | Barley | cytosol | 60.08 | 56.99 |
| KXG23810 | Sorghum | cytosol | 54.26 | 53.64 |
| Zm00001d030843_P001 | Maize | nucleus | 41.86 | 44.08 |
| GSMUA_Achr4P32570_001 | Banana | nucleus | 28.29 | 27.44 |
| CDY32837 | Canola | nucleus | 23.26 | 26.79 |
| Bra014221.1-P | Field mustard | nucleus | 22.87 | 26.7 |
| CDY16531 | Canola | nucleus | 22.87 | 26.34 |
| KRG91075 | Soybean | nucleus | 24.03 | 26.27 |
| CDY61552 | Canola | nucleus | 24.03 | 25.94 |
| Bra039652.1-P | Field mustard | nucleus | 24.03 | 25.51 |
| AT1G49850.1 | Thale cress | nucleus | 24.03 | 24.8 |
| CDY20854 | Canola | nucleus | 23.26 | 24.79 |
| Os03t0206900-01 | Rice | nucleus | 24.81 | 23.53 |
| Solyc01g107290.2.1 | Tomato | nucleus | 24.81 | 23.19 |
| KRH35698 | Soybean | nucleus | 22.09 | 23.17 |
| VIT_03s0091g00480.t01 | Wine grape | nucleus | 24.42 | 22.66 |
| PGSC0003DMT400066172 | Potato | nucleus | 23.64 | 21.18 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:4352637 | ProteinID:ABA99126.2 | EMBL:AK072892 | ProteinID:BAF30151.1 |
| ProteinID:BAT17813.1 | ProteinID:EEE53497.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0061630 | EMBL:HQ324823 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os12g0580700 |
| EnsemblPlants:Os12t0580700-01 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF219 | UniProt:Q2QN37 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0000D89E57 | RefSeq:XP_015618460.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING finger protein OsRFPH2-18, RING-H2 protein 18Similar to RING-H2 finger protein ATL2N. (Os12t0580700-01)
Coordinates
chr12:+:24060616..24064631
Molecular Weight (calculated)
27752.4 Da
IEP (calculated)
8.022
GRAVY (calculated)
-0.598
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIASKLVYF QRRRPSPAPP EPEPEPPDPR RRPCRAGAGA SAARRRKPGQ EHVPGSKRDT SKGVASAGNI TGQAGSTGSS SRLNRSVSDH GRLPDSVQQA
101: RERLLQRLNS VDLSGRRQNT SLSSETIHGG VAPGVSTTAD SIFSSLTSCF HTDVSIAPCK LQESTAETFN TADKHTFIAH CSEPAPTQEV ASCRVTDDDE
201: LAGPSTECSI CLERCGDADG LLELRCKHIF HSACLERWLR SRSDCPYCRA SVLLTAEG
101: RERLLQRLNS VDLSGRRQNT SLSSETIHGG VAPGVSTTAD SIFSSLTSCF HTDVSIAPCK LQESTAETFN TADKHTFIAH CSEPAPTQEV ASCRVTDDDE
201: LAGPSTECSI CLERCGDADG LLELRCKHIF HSACLERWLR SRSDCPYCRA SVLLTAEG
001: MRLLVAEAAS PLSSAATPTC NSHTCRWKPY SNSTDFTANA SVLLILVISA LICALSLYAA IRCFLRPTLE TEDDHKPDPE AAASSTPTTP TLVYSSDLEL
101: AGAEAECAIC LSEFEQGESI QVLEKCQHGF HVKCIHKWLS TRSSCPTCRT SIFSQHSETP SSHINA
101: AGAEAECAIC LSEFEQGESI QVLEKCQHGF HVKCIHKWLS TRSSCPTCRT SIFSQHSETP SSHINA
Arabidopsis Description
ATL79At5g47610 [Source:UniProtKB/TrEMBL;Acc:Q1H5E6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.