Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0580700-01 | |
| Os04t0101800-01 | |
| Os08t0265500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06780.1 | Os02t0580700-01 | AT1G19010.1 | 21798944 |
| AT5G06780.1 | Os08t0265500-01 | AT4G30490.1 | 21798944 |
| AT5G06780.1 | Os04t0101800-01 | AT5G65683.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G177600.1 | Wheat | nucleus | 69.96 | 76.16 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 69.57 | 75.9 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 68.99 | 75.11 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 67.64 | 73.63 |
| OQU89150 | Sorghum | nucleus | 64.34 | 73.13 |
| Zm00001d019922_P003 | Maize | nucleus | 60.85 | 69.47 |
| Os08t0328300-02 | Rice | nucleus | 59.69 | 67.25 |
| Zm00001d005106_P005 | Maize | mitochondrion | 58.91 | 65.94 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 14.34 | 60.16 |
| KRH38126 | Soybean | nucleus | 37.21 | 57.66 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 45.54 | 54.27 |
| GSMUA_Achr11P... | Banana | nucleus | 26.36 | 54.18 |
| Bra009226.1-P | Field mustard | cytosol | 32.36 | 54.05 |
| KRH27522 | Soybean | nucleus | 45.35 | 53.67 |
| CDX70488 | Canola | nucleus | 39.92 | 53.65 |
| CDX78501 | Canola | nucleus | 40.31 | 53.61 |
| Bra006175.1-P | Field mustard | nucleus | 39.92 | 53.51 |
| AT5G13020.1 | Thale cress | nucleus | 40.89 | 53.15 |
| CDX85675 | Canola | nucleus | 40.12 | 52.94 |
| PGSC0003DMT400016200 | Potato | nucleus | 43.8 | 52.8 |
| Bra008863.1-P | Field mustard | nucleus | 40.12 | 52.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.15 | 52.47 |
| Solyc01g073960.2.1 | Tomato | nucleus | 43.41 | 52.46 |
| Solyc10g044960.1.1 | Tomato | nucleus | 43.8 | 52.31 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 28.49 | 52.13 |
| CDX73835 | Canola | nucleus | 32.17 | 51.55 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 31.01 | 51.45 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 48.06 | 50.72 |
| CDX97218 | Canola | nucleus | 40.31 | 50.36 |
| CDX69677 | Canola | nucleus | 40.31 | 50.36 |
| KRH43436 | Soybean | cytosol | 42.83 | 50.34 |
| Bra001437.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 32.56 | 50.3 |
| VIT_08s0007g06350.t01 | Wine grape | nucleus | 46.71 | 49.9 |
| KRH13882 | Soybean | nucleus | 41.86 | 49.88 |
| KRH36382 | Soybean | nucleus | 45.16 | 49.57 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 45.16 | 49.05 |
| Os04t0659400-01 | Rice | nucleus | 37.21 | 48.0 |
| KRH36326 | Soybean | nucleus | 29.46 | 47.95 |
| KRG93077 | Soybean | nucleus | 38.76 | 47.85 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 29.07 | 46.88 |
| AT3G12140.3 | Thale cress | cytosol | 33.72 | 45.43 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 42.64 | 45.08 |
| CDY68247 | Canola | nucleus | 34.69 | 44.97 |
| Bra038698.1-P | Field mustard | extracellular | 33.33 | 44.79 |
| PGSC0003DMT400053543 | Potato | nucleus | 34.11 | 44.67 |
| Solyc06g009900.1.1 | Tomato | nucleus | 33.72 | 44.5 |
| AT2G44440.1 | Thale cress | nucleus | 36.82 | 44.29 |
| KRH71929 | Soybean | nucleus | 35.27 | 42.92 |
| CDY50571 | Canola | extracellular | 33.33 | 42.79 |
| Bra004832.1-P | Field mustard | cytosol | 33.72 | 42.44 |
| CDY42126 | Canola | cytosol | 21.32 | 41.98 |
| Os08t0510500-01 | Rice | nucleus | 22.09 | 41.91 |
| CDY17849 | Canola | plastid | 23.06 | 40.75 |
| Solyc03g063280.2.1 | Tomato | nucleus | 35.85 | 40.3 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 26.74 | 37.91 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 44.77 | 37.32 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 47.87 | 34.59 |
| Bra023388.1-P | Field mustard | cytosol | 38.18 | 33.85 |
| CDX95603 | Canola | nucleus | 35.85 | 32.46 |
| Bra000353.1-P | Field mustard | nucleus | 33.33 | 32.39 |
| PGSC0003DMT400046911 | Potato | cytoskeleton, cytosol, nucleus | 9.88 | 32.28 |
| CDX83427 | Canola | nucleus | 32.17 | 31.26 |
| CDX91150 | Canola | nucleus | 40.5 | 30.6 |
| GSMUA_Achr11P... | Banana | plastid | 13.57 | 29.66 |
| CDY00757 | Canola | cytosol | 34.88 | 25.57 |
| Bra041089.1-P | Field mustard | cytosol | 13.57 | 23.33 |
| CDY45580 | Canola | mitochondrion | 14.34 | 22.16 |
| Os10t0436850-00 | Rice | plasma membrane | 12.6 | 11.48 |
Protein Annotations
| Gene3D:1.10.1240.40 | Gene3D:2.30.30.140 | MapMan:35.1 | UniProt:A0A0P0XLN5 | ProteinID:BAT07209.1 | ncoils:Coil |
| InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016301 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0050832 | InterPro:IPR005491 | InterPro:Lamin-B_rcpt_of_tudor | EnsemblPlantsGene:Os09g0279000 |
| EnsemblPlants:Os09t0279000-01 | PFAM:PF03735 | PFAM:PF09465 | PFscan:PS51138 | PANTHER:PTHR33432 | PANTHER:PTHR33432:SF2 |
| SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | UniParc:UPI000393926A | SEG:seg | : |
Description
Similar to r-interacting factor1. (Os09t0279000-01)
Coordinates
chr9:-:5837785..5843899
Molecular Weight (calculated)
55252.8 Da
IEP (calculated)
9.800
GRAVY (calculated)
-0.731
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: LSPRRSARFP PKSRRIPPPL PRPLPPEGGG LVLISGAALA GARARLPGGG PPQSVDYGGG QASDSSGTAD DLPPPYPSNR GIRGSGRVSG NGRAIVPAGS
101: YTRAHTDMAT QIHHLEQEAY CSVLRAFKAQ SDAITWEKEG LITELRKELR VSDVDHRELL NRVNSDDIIR SIREWRSAGG PQAMLPNNAQ PMHDLAPSPT
201: TSGRKRQKTS QSFPALPAPP PVMHSQQLAL QGPPSSSTAK KGASSGAKGK KTKPGQKVPG GPSVKAMTSS AGPSGRGPHM NRNFPVGLVS FEPSEALHIN
301: PLINRKVMSR WPEDNSFYEA TITDYNPETD LYALAYDINT ANESWEWVDL KQMGPEDIRW QGDDPGIYQG VRGAPGSGGK KSSSRGGPTP GTGRGRGLPK
401: HVSRKDFPPS QNGVGKRSSD DIDILHTESL IKEVERVFSI NNPDPLEVEK AKKVLKEQEQ SLIDAIARLA EASDGESDEH NRVRRNAPYA GSQHQANYAD
501: AMAVDGGHML GGADAV
101: YTRAHTDMAT QIHHLEQEAY CSVLRAFKAQ SDAITWEKEG LITELRKELR VSDVDHRELL NRVNSDDIIR SIREWRSAGG PQAMLPNNAQ PMHDLAPSPT
201: TSGRKRQKTS QSFPALPAPP PVMHSQQLAL QGPPSSSTAK KGASSGAKGK KTKPGQKVPG GPSVKAMTSS AGPSGRGPHM NRNFPVGLVS FEPSEALHIN
301: PLINRKVMSR WPEDNSFYEA TITDYNPETD LYALAYDINT ANESWEWVDL KQMGPEDIRW QGDDPGIYQG VRGAPGSGGK KSSSRGGPTP GTGRGRGLPK
401: HVSRKDFPPS QNGVGKRSSD DIDILHTESL IKEVERVFSI NNPDPLEVEK AKKVLKEQEQ SLIDAIARLA EASDGESDEH NRVRRNAPYA GSQHQANYAD
501: AMAVDGGHML GGADAV
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.