Factsheet for VIT_06s0004g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70488	Canola	nucleus	53.89	66.67
Bra006175.1-P	Field mustard	nucleus	53.47	65.97
CDX78501	Canola	nucleus	53.47	65.46
Bra008863.1-P	Field mustard	nucleus	53.89	64.97
AT5G13020.1	Thale cress	nucleus	53.68	64.23
CDX85675	Canola	nucleus	52.42	63.68
CDX97218	Canola	nucleus	54.74	62.95
CDX69677	Canola	nucleus	54.32	62.47
KRG93077	Soybean	nucleus	54.53	61.96
VIT_13s0156g00360.t01	Wine grape	nucleus	56.0	61.43
KRH36326	Soybean	nucleus	40.63	60.88
GSMUA_AchrUn_...	Banana	nucleus	46.32	57.14
VIT_08s0007g06350.t01	Wine grape	nucleus	56.42	55.49
GSMUA_Achr4P13240_001	Banana	nucleus	55.58	53.99
Os08t0328300-02	Rice	nucleus	49.47	51.31
OQU89150	Sorghum	nucleus	47.58	49.78
EES14911	Sorghum	nucleus	48.0	49.67
Zm00001d019922_P003	Maize	nucleus	47.16	49.56
TraesCS5D01G177600.1	Wheat	nucleus	49.05	49.16
HORVU5Hr1G053150.1	Barley	nucleus, plastid	48.84	49.05
TraesCS5B01G170500.1	Wheat	nucleus	48.63	48.73
TraesCS5A01G173100.1	Wheat	nucleus, plastid	48.42	48.52
Zm00001d050116_P003	Maize	nucleus	46.32	48.03
Zm00001d005106_P005	Maize	mitochondrion	45.89	47.29
GSMUA_Achr3P11710_001	Banana	nucleus	48.42	47.13
Os09t0279000-01	Rice	mitochondrion	49.05	45.16
GSMUA_Achr4P11340_001	Banana	cytosol	32.63	42.58
Bra023388.1-P	Field mustard	cytosol	49.68	40.55
CDX91150	Canola	nucleus	53.68	37.34
GSMUA_Achr7P06400_001	Banana	cytosol	54.53	36.27
VIT_08s0056g01450.t01	Wine grape	cytosol, mitochondrion, nucleus	16.63	30.74
KXG35268	Sorghum	mitochondrion, nucleus	37.89	29.08

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100257061	wikigene:100257061	MapMan:35.1	InterPro:Agenet_dom_plant	ProteinID:CCB43761
ProteinID:CCB43761.1	ncoils:Coil	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	UniProt:F6GUE0
EMBL:FN594951	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0050832
InterPro:IPR005491	EntrezGene:LOC100257061	wikigene:LOC100257061	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432
PANTHER:PTHR33432:SF6	SMART:SM00743	SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	TIGR:TC70282
UniParc:UPI0002108C2E	ArrayExpress:VIT_06s0004g01350	EnsemblPlantsGene:VIT_06s0004g01350	EnsemblPlants:VIT_06s0004g01350.t01	unigene:Vvi.16736	RefSeq:XP_002285615
RefSeq:XP_002285615.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:1589037..1604198

Molecular Weight (calculated)

51724.2 Da

IEP (calculated)

6.087

GRAVY (calculated)

-0.826

Length

475 amino acids

Sequence
(BLAST)

001: MIHQAQAPCP CSNQKELSEL DEMLIANDAI DSSLETSKGT DDDLPPSHQN RFSRGGRASG NGRSGVLGSA PFPRMHGDME AQIHHIEQEA YSSVLRAFKA
101: QSDAITWEKE SLITELRKEL RVSDEEHREL LSRVNADDII RSIREWRKGG GLQHGMAAQP VHESIPSPTV SASRKKQKTS QSIASLSLGA PSPALHPTMQ
201: PSSSALKHAP TPRSKSKKTK PYPSAGLTGR PQLANRGSSG AFVGNEAAEG TTYDPLIGKK VWTRWPEDNH FYEAVITDYN PVEGRHALVY DINTTNETWE
301: WVNLKEISPE DIRWEGDESG MSRRGSRPGP GRGMKKSMAR GGAVTGAGRG RGTPKGQSKK VFPPSQNGLE KKDDSSLEIY NTDSLIKEVE RVVTTANPDS
401: VQILEVKKML KEQEQALVDI IAKLDEASDG ESEEAGARQE DEAGGEGRVA KGSNSEKMAG EEGRAASDEG HDVQF

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.