Factsheet for GSMUA_Achr7P06400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13240_001	Banana	nucleus	47.48	69.33
GSMUA_AchrUn_...	Banana	nucleus	37.25	69.09
GSMUA_Achr11P...	Banana	nucleus	22.27	63.35
Bra006175.1-P	Field mustard	nucleus	33.19	61.56
Bra008863.1-P	Field mustard	nucleus	33.89	61.42
AT5G13020.1	Thale cress	nucleus	33.89	60.96
CDX70488	Canola	nucleus	32.49	60.42
CDX85675	Canola	nucleus	33.05	60.36
CDX78501	Canola	nucleus	32.77	60.31
CDX97218	Canola	nucleus	34.31	59.32
GSMUA_Achr3P11710_001	Banana	nucleus	40.48	59.22
CDX69677	Canola	nucleus	33.89	58.6
KRH36326	Soybean	nucleus	25.91	58.36
KRG93077	Soybean	nucleus	33.89	57.89
Os08t0328300-02	Rice	nucleus	36.69	57.21
EES14911	Sorghum	nucleus	36.13	56.21
OQU89150	Sorghum	nucleus	35.01	55.07
VIT_06s0004g01350.t01	Wine grape	nucleus	36.27	54.53
Zm00001d019922_P003	Maize	nucleus	33.75	53.32
GSMUA_Achr4P11340_001	Banana	cytosol	27.17	53.3
TraesCS5B01G170500.1	Wheat	nucleus	35.15	52.95
HORVU5Hr1G053150.1	Barley	nucleus, plastid	35.01	52.85
TraesCS5D01G177600.1	Wheat	nucleus	35.01	52.74
Zm00001d050116_P003	Maize	nucleus	33.75	52.62
Zm00001d005106_P005	Maize	mitochondrion	33.75	52.28
TraesCS5A01G173100.1	Wheat	nucleus, plastid	34.31	51.69
Os09t0279000-01	Rice	mitochondrion	34.59	47.87
Bra023388.1-P	Field mustard	cytosol	30.81	37.8
GSMUA_Achr8P04620_001	Banana	cytosol	9.52	36.17
CDX91150	Canola	nucleus	32.91	34.41
GSMUA_Achr11P...	Banana	plastid	10.92	33.05
KXG35268	Sorghum	mitochondrion, nucleus	26.89	31.02
GSMUA_Achr8P04630_001	Banana	nucleus	7.42	24.77

Protein Annotations

Gene3D:1.10.1240.40	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ncoils:Coil	InterPro:EMSY-LIKE_plant
InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0046872	GO:GO:0050832
EnsemblPlantsGene:GSMUA_Achr7G06400_001	EnsemblPlants:GSMUA_Achr7P06400_001	EnsemblPlants:GSMUA_Achr7T06400_001	InterPro:IPR000571	InterPro:IPR005491	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0TF80	PFAM:PF00013	PFAM:PF00642
PFAM:PF03735	PFAM:PF14608	PFscan:PS50084	PFscan:PS50103	PFscan:PS51138	PANTHER:PTHR33432
PANTHER:PTHR33432:SF6	SMART:SM00322	SMART:SM00356	SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF54791
SUPFAM:SSF63748	SUPFAM:SSF90229	UniParc:UPI000295897D	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

Zinc finger CCCH domain-containing protein 14 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06400_001]

Coordinates

chr7:+:4704250..4721159

Molecular Weight (calculated)

76100.0 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.582

Length

714 amino acids

Sequence
(BLAST)

001: MEFDPSDSSG TDDDLPPPHQ NRGIRGGQVT GNGRATIGAI PYARMQNDME TQIHRLEQEA YSSVLRAFKA QSDAITWEKE SLITELRKEL RVSDEEHREL
101: LSRVNADDII RRIREWRQAG GLQSGMFNNV QPDVPVPSPT ISASRKRQRT SQPVPSLSLD APSPGLQSQP VVAPMQPSSS AAKRGTATAA KGKKPKSAQT
201: LPGVSSMKSM QYPSAGPSGR SQVASRNSSG APMIDPAKKT PYDPLIGRKV MTRWPEDNNF YEAVITDYNP VEGLHALVYD IDTKDETWEW VNLKDISPDD
301: IRWEGGDPGI SHRPGQGGVK RSTGRGGGIP GAGRGRGTMK NQAKKQFPPS QNGIGKKRAG DIEILHTETL IKEVEKVFGA SHPDPLEIEK AKKLLKEHEQ
401: SLIDAIAMLA DASDGESAAR KRGRPEVANG GGAGSKRLRE TDSFQSGIGS KSKPCTKFFS TAGCPFGEGC HFLHYVPGGL QAVAQMTNLG NPALGPPSRN
501: PVAHPAIHDG APVPPVKTRI CNKYNTAEGC KFGEKCHFAH GERELGKPIL SSLDGPMAPS MGGRLGGRFE LPPPAGVDAA AASFGASATA KISVDASLAG
601: AIIGKGGVNT KQICRMTGAK LSIRDHESDP NLRNIELEGS FDQIKQASAM VRELIVNISS STGIAARNPA PAASAGPGSN YKTKLCENFG KGACTFGDRC
701: HFAHGASELR KSAA

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.