Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06780.1 | OQU85212 | AT1G19010.1 | 21798944 |
| AT5G06780.1 | EES13629 | AT4G30490.1 | 21798944 |
| AT5G06780.1 | KXG26754 | AT4G30490.1 | 21798944 |
| AT5G06780.1 | OQU81040 | AT5G65683.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050116_P003 | Maize | nucleus | 87.36 | 87.55 |
| Os08t0328300-02 | Rice | nucleus | 75.16 | 75.33 |
| OQU89150 | Sorghum | nucleus | 62.09 | 62.78 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 16.78 | 62.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.49 | 56.62 |
| GSMUA_Achr11P... | Banana | nucleus | 30.28 | 55.38 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 51.85 | 54.97 |
| AT5G13020.1 | Thale cress | nucleus | 47.49 | 54.91 |
| KRH38126 | Soybean | nucleus | 39.65 | 54.65 |
| CDX70488 | Canola | nucleus | 45.53 | 54.43 |
| Bra006175.1-P | Field mustard | nucleus | 45.53 | 54.29 |
| GSMUA_Achr4P13240_001 | Banana | nucleus | 57.52 | 53.99 |
| CDX85675 | Canola | nucleus | 45.97 | 53.96 |
| KRH27522 | Soybean | nucleus | 51.2 | 53.9 |
| Bra009226.1-P | Field mustard | cytosol | 35.95 | 53.4 |
| Bra008863.1-P | Field mustard | nucleus | 45.75 | 53.3 |
| Solyc01g073960.2.1 | Tomato | nucleus | 49.46 | 53.16 |
| CDX78501 | Canola | nucleus | 44.88 | 53.09 |
| PGSC0003DMT400016200 | Potato | nucleus | 49.46 | 53.04 |
| Solyc10g044960.1.1 | Tomato | nucleus | 49.24 | 52.31 |
| CDX97218 | Canola | nucleus | 46.84 | 52.06 |
| CDX70068 | Canola | cytoskeleton, cytosol, nucleus | 31.81 | 51.77 |
| CDX69677 | Canola | nucleus | 46.41 | 51.57 |
| CDX98955 | Canola | cytoskeleton, cytosol, nucleus | 34.86 | 51.45 |
| CDX73835 | Canola | nucleus | 35.73 | 50.93 |
| KRH36382 | Soybean | nucleus | 52.07 | 50.85 |
| KRH36326 | Soybean | nucleus | 35.08 | 50.79 |
| KRH43436 | Soybean | cytosol | 47.93 | 50.11 |
| KRG93077 | Soybean | nucleus | 45.53 | 50.0 |
| VIT_08s0007g06350.t01 | Wine grape | nucleus | 52.07 | 49.48 |
| KRH13882 | Soybean | nucleus | 46.62 | 49.42 |
| Bra001437.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 35.51 | 48.8 |
| VIT_06s0004g01350.t01 | Wine grape | nucleus | 49.67 | 48.0 |
| EER96978 | Sorghum | nucleus | 40.3 | 46.95 |
| PGSC0003DMT400053543 | Potato | nucleus | 40.3 | 46.95 |
| AT5G06780.1 | Thale cress | cytoskeleton, cytosol, nucleus | 32.68 | 46.88 |
| GSMUA_Achr3P11710_001 | Banana | nucleus | 49.02 | 46.11 |
| AT2G44440.1 | Thale cress | nucleus | 42.7 | 45.69 |
| Solyc06g009900.1.1 | Tomato | nucleus | 38.78 | 45.52 |
| AT3G12140.3 | Thale cress | cytosol | 37.47 | 44.91 |
| GSMUA_Achr4P11340_001 | Banana | cytosol | 35.08 | 44.23 |
| CDY68247 | Canola | nucleus | 38.34 | 44.22 |
| Bra038698.1-P | Field mustard | extracellular | 36.17 | 43.23 |
| Bra004832.1-P | Field mustard | cytosol | 37.69 | 42.2 |
| EES15392 | Sorghum | nucleus | 27.02 | 42.03 |
| CDY50571 | Canola | extracellular | 36.38 | 41.54 |
| Solyc03g063280.2.1 | Tomato | nucleus | 40.96 | 40.96 |
| KRH71929 | Soybean | nucleus | 37.69 | 40.8 |
| CDY17849 | Canola | plastid | 25.05 | 39.38 |
| CDY42126 | Canola | cytosol | 21.79 | 38.17 |
| GSMUA_Achr7P06400_001 | Banana | cytosol | 56.21 | 36.13 |
| Bra023388.1-P | Field mustard | cytosol | 43.57 | 34.36 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 44.66 | 33.12 |
| CDX95603 | Canola | nucleus | 40.3 | 32.46 |
| PGSC0003DMT400046911 | Potato | cytoskeleton, cytosol, nucleus | 11.11 | 32.28 |
| Bra000353.1-P | Field mustard | nucleus | 37.25 | 32.2 |
| CDX91150 | Canola | nucleus | 46.84 | 31.48 |
| CDX83427 | Canola | nucleus | 36.17 | 31.26 |
| GSMUA_Achr11P... | Banana | plastid | 15.25 | 29.66 |
| CDY00757 | Canola | cytosol | 37.25 | 24.29 |
| Bra041089.1-P | Field mustard | cytosol | 14.16 | 21.67 |
| CDY45580 | Canola | mitochondrion | 15.25 | 20.96 |
| EER94188 | Sorghum | cytosol | 15.03 | 11.52 |
Protein Annotations
| Gene3D:1.10.1240.40 | Gene3D:2.30.30.140 | MapMan:35.1 | EntrezGene:8069905 | UniProt:C5YKE6 | ncoils:Coil |
| EnsemblPlants:EES14911 | ProteinID:EES14911 | ProteinID:EES14911.1 | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 | InterPro:IPR005491 |
| InterPro:Lamin-B_rcpt_of_tudor | PFAM:PF03735 | PFAM:PF09465 | PFscan:PS51138 | PANTHER:PTHR33432 | PANTHER:PTHR33432:SF2 |
| SMART:SM01191 | EnsemblPlantsGene:SORBI_3007G112200 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | unigene:Sbi.11844 | UniParc:UPI0001A8799C |
| RefSeq:XP_002445416.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:42750236..42766819
Molecular Weight (calculated)
50482.3 Da
IEP (calculated)
6.692
GRAVY (calculated)
-0.805
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MECGGAVDSS GTDDDLPPSY QNSRGMKGSA RITGNGRDTI GASLYTRVQP QTDMETQIHQ LEQEAYCSVL RAFKAQSDAI TWEKESLITE LRKELQVSDK
101: EHRELLNRVN SDDIIRRIRE WRESTGGLKM NLVNNSQRTH DPMPSPTTSA RKRQKMSQPI PSASVPAPSA MHSQPLTAPM QPSSSGAKKA APPGTKVKKT
201: KAGQKIPGGP AVKSMPSSAG PGGRGPIINR NMSAGLPPEG SQLNPLIGRK VMTRWPDDNS FYEAEITDYN PSKDVYALVY DINTAHETWE WVDFKEMAPE
301: DIRWEGEEPD LNLVGRGASV HGVKKSISHG GPMSGAGRDR GLQKNSFKKD YPSSQNGIGK KSSDYIEILH TETLIKEVER VFSAANPDPL EMERAKKVLK
401: EHEQSLIDAI ARLAEASDGE GDDRVRALEY NRGWRNQHGG RYVDDMTIDG LMAGDADAM
101: EHRELLNRVN SDDIIRRIRE WRESTGGLKM NLVNNSQRTH DPMPSPTTSA RKRQKMSQPI PSASVPAPSA MHSQPLTAPM QPSSSGAKKA APPGTKVKKT
201: KAGQKIPGGP AVKSMPSSAG PGGRGPIINR NMSAGLPPEG SQLNPLIGRK VMTRWPDDNS FYEAEITDYN PSKDVYALVY DINTAHETWE WVDFKEMAPE
301: DIRWEGEEPD LNLVGRGASV HGVKKSISHG GPMSGAGRDR GLQKNSFKKD YPSSQNGIGK KSSDYIEILH TETLIKEVER VFSAANPDPL EMERAKKVLK
401: EHEQSLIDAI ARLAEASDGE GDDRVRALEY NRGWRNQHGG RYVDDMTIDG LMAGDADAM
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.