CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0436850-00	Rice	plasma membrane	25.21	26.68
TraesCS1B01G155200.1	Wheat	nucleus	23.71	22.94
TraesCS1D01G192300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	22.7	21.83
GSMUA_Achr8P04620_001	Banana	cytosol	6.84	21.81
Zm00001d032901_P001	Maize	nucleus	20.37	17.91
VIT_08s0056g01450.t01	Wine grape	cytosol, mitochondrion, nucleus	7.68	17.9
EES15392	Sorghum	nucleus	8.18	16.61
EER96978	Sorghum	nucleus	10.52	15.99
KRG94907	Soybean	cytosol	8.18	15.41
EES14911	Sorghum	nucleus	11.52	15.03
OQU89150	Sorghum	nucleus	11.02	14.54
KXG35268	Sorghum	mitochondrion, nucleus	9.52	9.21

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.2	UniProt:C5X0J6	ncoils:Coil	EnsemblPlants:EER94188	ProteinID:EER94188
ProteinID:EER94188.2	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009011	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0019252	InterPro:IPR005491	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR31948	PANTHER:PTHR31948:SF11
SMART:SM01191	EnsemblPlantsGene:SORBI_3001G240400	SUPFAM:SSF158639	unigene:Sbi.20060	UniParc:UPI00081ACFA0	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:24710202..24716251

Molecular Weight (calculated)

64772.0 Da

IEP (calculated)

7.818

GRAVY (calculated)

-0.306

Length

599 amino acids

Sequence
(BLAST)

001: MEDSVQVACV IPSAADAAFQ IYSLKRSAYA AVLRAFCAQS DILSRDKVRC LTELRNELKI LQTEHAECLV KARSNKQIKS FSVGLHSKGN TCSTEVIKDF
101: LGLACVLPDA GDTVFQIHCL ERSAYASVLR AFCAVTNHLS LLQVKLLSQL KNELRISHSE HKEVLMKVSL NEHIKSLRKF SLANLSVVTK TNPAFDVHAV
201: LHDKIGPTGQ VCTSSTSCLS LIQQSSVSEN SMSSTRDIGI SDSSNGAEGP YFESHTVVSA KRLKTVNGHA PAYLKCGPSN QLRVAVSAVM VEKHSQLNAG
301: QGPLSVDHTS QESGKRKTVV PEMSVSESLD VMDRKYEIEY QKPKNKDSDL EHGSEIIKLC LTASLLSKVE RIFKENPDSA NLEKAKLTLK AQEKDLLGAL
401: AKLSEVSYDV VYFGANHNHR SVNLNEHGDG KGDEAVLPKL VSSSDETLPG ARLGDGGTEN KVKIQGIASI IVPLSSDPHQ WHCQPIPAPP GPATARGRVF
501: RPWPADGRGA DLHALGAVQE NQVHGGADGA DAGVRGALWV VHPQGWCGSC RCLLHPDQRP SARLQEMVKQ QQVPRQDSTL CSAVAPPRSP GHHSAGTDD

Best Arabidopsis Sequence Match ( AT5G13020.3 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEVIMISVFL LV

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.