CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020946_P005	Maize	nucleus	83.76	86.84
TraesCS5D01G274200.1	Wheat	nucleus	73.1	73.47
TraesCS5A01G266400.1	Wheat	nucleus	72.84	73.21
TraesCS5B01G266000.1	Wheat	nucleus	72.84	73.21
HORVU5Hr1G073510.5	Barley	nucleus	72.33	72.7
Os04t0659400-01	Rice	nucleus	70.3	69.25
Zm00001d006030_P001	Maize	cytosol	82.23	64.16
EES15392	Sorghum	nucleus	35.03	46.78
EES14911	Sorghum	nucleus	46.95	40.3
OQU89150	Sorghum	nucleus	44.92	38.99
KXG35268	Sorghum	mitochondrion, nucleus	37.56	23.91
EER94188	Sorghum	cytosol	15.99	10.52

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.1	EntrezGene:8064855	UniProt:C5X3Y1	ncoils:Coil	EnsemblPlants:EER96978
ProteinID:EER96978	ProteinID:EER96978.1	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0006950
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	InterPro:IPR005491	PFAM:PF03735
PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF1	SMART:SM01191	EnsemblPlantsGene:SORBI_3002G248400	SUPFAM:SSF158639
SUPFAM:SSF63748	UniParc:UPI0001A837AE	RefSeq:XP_002460457.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:63613924..63618830

Molecular Weight (calculated)

43572.8 Da

IEP (calculated)

6.032

GRAVY (calculated)

-0.823

Length

394 amino acids

Sequence
(BLAST)

001: MKAAGYNPYD SSGTDDDLPP AQNRGLRGRS FSGNGRASAG AFPYMRANND LESEIHRVEQ DAYTGVLRAF KVQSDAISWE KESLITELRK ELRVSDEEHR
101: ELLNKVNEDG AIRRMRELRQ AGGTPGGLHR GNRVLYDADP GPTTKRQRAS HSIPSQSAGL QSPMMPSHSV PSAKWGPLSA RGKKAKTPIP LALPSVDPGS
201: LINHKVYTRW PEDNNFYEAT ITQYNPVTGE HSLVYDMGTQ AETWESVRLC DMAPEDIRWE FDGHLSNRDG WGPSGPMLKR HPTNNGAVAG SFRGRGRLSI
301: NEPIKDYAPP QNGINRNFDH VDIPNTESVV TEVERVLSNP NMPEIEKARK LLKDQEQSLL DAIARLDEAS DSDSEDMAME GRMGSAGERN GIAT

Best Arabidopsis Sequence Match ( AT2G44440.1 )
(BLAST)

001: MDCKSSDSSG TDDDLPPSHR VPRGGGGGRG GRVAGNGRPL NLPPSYPKMY DDLAADMEAQ IHQIEKEAYI SVLRAFKAQG DAISWEKESV ITELRKELSL
101: SNEEHRELLG RVNSDDTIRR IREWRQSGGM QPSMRNAAQV VHDTLPSPSV SASMKTHKPN QPIPSQPFAS SSPSFHPQAD PTHPFASSTA KRGPVPIVKG
201: KKHKPVFPGS SSTKHAPYHP SDQPPRGQVM NRLPSVPASS SEPTNGIDPE SFLGRRVRTK WPEDNTFYDA IITQYNPVEG RHALVYDIAT PSETWEWVRL
301: SEISPGDIEW IGEDPGLGNR YNGQGHGLNR TTGPNCVPQR GSGLEKNTIR KGFRTSQNGT GKKKHLDIRI RQTDVLIREV ERVLRSHNPD PYEVERAKRV
401: LEEHEHALVG AIAKLGDISD GENEGAFRR

Arabidopsis Description

EML4Protein EMSY-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q08A72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.