Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
plasma membrane: 19502382
plasma membrane: 28056797
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G155200.1 Wheat nucleus 28.45 26.01
EER94188 Sorghum cytosol 26.68 25.21
TraesCS1D01G192300.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole 26.33 23.92
GSMUA_Achr8P04620_001 Banana cytosol 7.42 22.34
VIT_08s0056g01450.t01 Wine grape cytosol, mitochondrion, nucleus 8.83 19.46
Os08t0510500-01 Rice nucleus 8.13 16.91
KRG94907 Soybean cytosol 9.01 16.04
Os08t0328300-02 Rice nucleus 12.54 15.5
Os04t0659400-01 Rice nucleus 10.07 14.25
Os09t0279000-01 Rice mitochondrion 11.48 12.6
Zm00001d032901_P001 Maize nucleus 15.02 12.48
Protein Annotations
Gene3D:1.10.1240.40MapMan:35.2UniProt:A0A0P0XUK0ProteinID:BAT10992.1InterPro:ENT_domInterPro:ENT_dom-like_sf
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003955GO:GO:0005488GO:GO:0006950
GO:GO:0008150GO:GO:0008152GO:GO:0009605GO:GO:0009607GO:GO:0010181GO:GO:0016491
GO:GO:0050832GO:GO:0055114InterPro:IPR005491EnsemblPlantsGene:Os10g0436850EnsemblPlants:Os10t0436850-00PFAM:PF03735
PFscan:PS51138SMART:SM01191SUPFAM:SSF158639UniParc:UPI0003938C1DSEG:seg:
Description
EMSY N-terminal domain containing protein. (Os10t0436850-00)
Coordinates
chr10:+:15605606..15609755
Molecular Weight (calculated)
62120.5 Da
IEP (calculated)
7.880
GRAVY (calculated)
-0.508
Length
566 amino acids
Sequence
(BLAST)
001: MDTLELASAI PEAGDEAFQI HRLKRSAYAA VLRAFYAQPD LLSGAKEGSL AKLRSEFTIF DTEHREYLMK AISGSQSLSV GLNKASICNI EVTKDSLDLV
101: PMITDAQDTA FQIHCLERSA YASVLRAFFA QSELLSRSQA KLLTELRKKL RISDAELREV LMNVTSNEYI KSLRNCSLAN NSGLKDPTFD ARAMVPDKLV
201: KDGQSFTSFT NCISLSQESQ ISPRSMLSVR SVDILRSSHR TKKGPCLYPH AIVPAKKYSG NEYTLSYLKS SPAEQLPVAV SSVQVKRSTD DPLDTKTLPC
301: EVKTGCTLSP IQLKHIQANA GHVPLCIHQD MKASMKRKTE VPEVTGSKSL TVIVSTAGNI EHDFDIMKLD LTANLLSKVE QLFREKPNPD DLETAKAILK
401: EQEKVLLDAV LKLSEVSYVE ECFSTNCQPD EFNQHYEYES DDEMPQKTAS TNDAETPPKP VSPSDKEAPP QPVPGRGGGA TSKGKAKPRD SGRSSGGGSG
501: SGGRLDAADD QPTSASTCTS SSTLSPRSER EGEAKAQRAR GRVFEPPAKR ARRPSVRLSR SEWLWW
Best Arabidopsis Sequence Match ( AT5G13020.3 )
(BLAST)
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEVIMISVFL LV
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.