CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72246
CDX83793
CDX83796
CDX96685
CDY08765
CDY37838
CDY39208
CDY45614
CDY52535

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	CDX83793	AT1G19010.1	21798944
AT5G06780.1	CDX83796	AT1G19010.1	21798944
AT5G06780.1	CDX96685	AT1G19010.1	21798944
AT5G06780.1	CDX72246	AT4G30490.1	21798944
AT5G06780.1	CDY39208	AT4G30490.1	21798944
AT5G06780.1	CDY08765	AT5G65683.1	21798944
AT5G06780.1	CDY37838	AT5G65683.1	21798944
AT5G06780.1	CDY45614	AT5G65683.1	21798944
AT5G06780.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70068	Canola	cytoskeleton, cytosol, nucleus	76.53	84.4
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	73.63	71.56
CDX73835	Canola	nucleus	69.45	67.08
KRH38126	Soybean	nucleus	62.7	58.56
CDY50571	Canola	extracellular	68.81	53.23
CDY42126	Canola	cytosol	44.05	52.29
KRH71929	Soybean	nucleus	60.45	44.34
CDX70488	Canola	nucleus	54.02	43.75
CDX78501	Canola	nucleus	54.02	43.3
CDX85675	Canola	nucleus	53.7	42.71
CDX69677	Canola	nucleus	56.59	42.62
CDX97218	Canola	nucleus	56.59	42.62
GSMUA_Achr11P...	Banana	nucleus	33.12	41.04
CDY17848	Canola	cytoskeleton, cytosol, nucleus	16.08	40.65
Zm00001d019922_P003	Maize	nucleus	52.41	36.06
Os08t0328300-02	Rice	nucleus	53.05	36.03
OQU89150	Sorghum	nucleus	51.45	35.24
CDY17849	Canola	plastid	32.8	34.93
EES14911	Sorghum	nucleus	51.45	34.86
Zm00001d050116_P003	Maize	nucleus	50.48	34.28
HORVU5Hr1G053150.1	Barley	nucleus, plastid	52.09	34.25
Solyc03g063280.2.1	Tomato	nucleus	50.48	34.2
TraesCS5D01G177600.1	Wheat	nucleus	52.09	34.18
CDY68247	Canola	nucleus	43.73	34.17
TraesCS5A01G173100.1	Wheat	nucleus, plastid	51.77	33.97
Zm00001d005106_P005	Maize	mitochondrion	50.16	33.84
TraesCS5B01G170500.1	Wheat	nucleus	51.45	33.76
PGSC0003DMT400046911	Potato	cytoskeleton, cytosol, nucleus	15.76	31.01
Os09t0279000-01	Rice	mitochondrion	51.45	31.01
CDY00757	Canola	cytosol	68.81	30.4
CDX91150	Canola	nucleus	55.63	25.33
CDX95603	Canola	nucleus	46.3	25.26
CDX83427	Canola	nucleus	40.19	23.54
KXG35268	Sorghum	mitochondrion, nucleus	42.77	21.49
CDY45580	Canola	mitochondrion	22.19	20.66

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.1	InterPro:Agenet_dom_plant	EnsemblPlants:CDX98955	ProteinID:CDX98955	ProteinID:CDX98955.1
ncoils:Coil	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00107070001	InterPro:IPR005491	PFAM:PF03735
PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7	SMART:SM00743	SMART:SM01191	SUPFAM:SSF158639
SUPFAM:SSF63748	UniParc:UPI0004EE1034	SEG:seg	:	:	:

Description

BnaC09g48800D

Coordinates

chrLK031907:-:787257..789604

Molecular Weight (calculated)

35219.1 Da

IEP (calculated)

5.432

GRAVY (calculated)

-0.679

Length

311 amino acids

Sequence
(BLAST)

001: MEVEIHILEQ EAYCAVLRAF KAQSDAISWE KESMITELRK ELRVSDDEHR ELLTSVHNDD IIKRIREWRQ GVVRHANNQS LDVLPSPAYS ASRKKQKTFQ
101: SYPSMGSTRS RSFNNHLVSG AVSAANEPAE ALIGRKVWTK WPEDNSFYEA VVTHYNAVEG RHALVYDLNT ANETWEWVDL KEIPPQDIRW GGEENGAALN
201: AGHGSRRTLS NGGLGRLPMT QPRRDHLVAQ NGGGRKLFDE IELFNTDSLV KEVERVFDSN LPDPHELDKA KKLLKEHEQA LVSAIARLAD ASDFESDGEE
301: AYMHELPVHE G

Best Arabidopsis Sequence Match ( AT5G06780.1 )
(BLAST)

001: MVGLHINMEA QIHILEQEAY SAVLRAFQAQ ADEFSWDKAT VMTNLRKELR ISDDENRQLL NNVHNDDLIK RIRDSRPRGG NQVVRHQSLD VHPSPTFSAS
101: RKKQKTFQSY PSIGSTRSKS FNNRVVSANE PAEALIGRKV WTKWPEDNSF YEAVVTQYNA NEGRHALVYD INTVNETWEW VDLNEIPTKD IRWDGEEDGV
201: TLNVGHGGGT TRGNRRTLSH GGRGRGPRTQ PRREHLATEN GGGRKFFGEI ELFNTDSLVK EVERVFDSNL PDPHELDKAK KLLKEHEQAL IAAIARLTDA
301: SDYESDGEEP YSHELPMLLG

Arabidopsis Description

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Source:TAIR;Acc:AT5G06780]
SUBAcon: [cytosol,nucleus,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.