Factsheet for PGSC0003DMT400046911

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029004
PGSC0003DMT400062849
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	PGSC0003DMT400062849	AT1G19010.1	21798944
AT5G06780.1	PGSC0003DMT400029004	AT4G30490.1	21798944
AT5G06780.1	PGSC0003DMT400078676	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g063280.2.1	Tomato	nucleus	60.13	20.7
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	33.54	16.56
KRH38126	Soybean	nucleus	33.54	15.92
CDX98955	Canola	cytoskeleton, cytosol, nucleus	31.01	15.76
CDX73835	Canola	nucleus	30.38	14.91
Bra009226.1-P	Field mustard	cytosol	28.48	14.56
Bra001437.1-P	Field mustard	cytoskeleton, cytosol, nucleus	28.48	13.47
KRH71929	Soybean	nucleus	35.44	13.21
Bra038698.1-P	Field mustard	extracellular	31.65	13.02
Os08t0328300-02	Rice	nucleus	36.08	12.45
CDX70068	Canola	cytoskeleton, cytosol, nucleus	22.15	12.41
PGSC0003DMT400016200	Potato	nucleus	33.54	12.38
CDY50571	Canola	extracellular	31.01	12.19
AT3G12140.3	Thale cress	cytosol	28.48	11.75
HORVU5Hr1G053150.1	Barley	nucleus, plastid	34.18	11.42
TraesCS5B01G170500.1	Wheat	nucleus	33.54	11.18
TraesCS5A01G173100.1	Wheat	nucleus, plastid	33.54	11.18
TraesCS5D01G177600.1	Wheat	nucleus	33.54	11.18
EES14911	Sorghum	nucleus	32.28	11.11
Zm00001d050116_P003	Maize	nucleus	31.01	10.7
Zm00001d005106_P005	Maize	mitochondrion	31.01	10.63
Zm00001d019922_P003	Maize	nucleus	30.38	10.62
OQU89150	Sorghum	nucleus	30.38	10.57
PGSC0003DMT400053543	Potato	nucleus	25.95	10.41
Os09t0279000-01	Rice	mitochondrion	32.28	9.88
CDY42126	Canola	cytosol	12.66	7.63
CDY00757	Canola	cytosol	30.38	6.82
KXG35268	Sorghum	mitochondrion, nucleus	20.25	5.17
GSMUA_Achr11P...	Banana	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400046911	EnsemblPlantsGene:PGSC0003DMG402018219	EntrezGene:102591049	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0050832	InterPro:EMSY-LIKE_plant	ncoils:Coil	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7
PGSC:PGSC0003DMG402018219	RefSeq:XP_006358478.1	SEG:seg	UniParc:UPI000294A7E8	UniProt:M1BJU5	MapMan:35.2

Description

Emsy N terminus domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402018219]

Coordinates

chr1:-:79403760..79404236

Molecular Weight (calculated)

16967.0 Da

IEP (calculated)

5.280

GRAVY (calculated)

-0.565

Length

158 amino acids

Sequence
(BLAST)

001: MDIRWIGGDP GISRVGGGGG PGYGGVNTLN AGRGRRFARQ QFENDVNASE NRIVQKTSDE IEILHTATLI KKVIDASRPD LAELAKAKKM LKEHEQALID
101: VIAKLTDGCE SGSGGEPPFF HKNDLLGSNH DGVDMEPGMR ARGQGAPENH PDEDVIVI

Best Arabidopsis Sequence Match ( AT5G06780.1 )
(BLAST)

001: MVGLHINMEA QIHILEQEAY SAVLRAFQAQ ADEFSWDKAT VMTNLRKELR ISDDENRQLL NNVHNDDLIK RIRDSRPRGG NQVVRHQSLD VHPSPTFSAS
101: RKKQKTFQSY PSIGSTRSKS FNNRVVSANE PAEALIGRKV WTKWPEDNSF YEAVVTQYNA NEGRHALVYD INTVNETWEW VDLNEIPTKD IRWDGEEDGV
201: TLNVGHGGGT TRGNRRTLSH GGRGRGPRTQ PRREHLATEN GGGRKFFGEI ELFNTDSLVK EVERVFDSNL PDPHELDKAK KLLKEHEQAL IAAIARLTDA
301: SDYESDGEEP YSHELPMLLG

Arabidopsis Description

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Source:TAIR;Acc:AT5G06780]
SUBAcon: [cytoskeleton,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.