CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02973
KRH03382
KRH39527
KRH45468
KRH45469
KRH56999
KRH72370
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	KRH03382	AT1G19010.1	21798944
AT5G06780.1	KRH56999	AT1G19010.1	21798944
AT5G06780.1	KRH02973	AT4G30490.1	21798944
AT5G06780.1	KRH72370	AT4G30490.1	21798944
AT5G06780.1	KRH39527	AT5G65683.1	21798944
AT5G06780.1	KRH45468	AT5G65683.1	21798944
AT5G06780.1	KRH45469	AT5G65683.1	21798944
AT5G06780.1	KRH74431	AT5G65683.1	21798944
AT5G06780.1	KRH75634	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38126	Soybean	nucleus	71.23	90.69
Bra009226.1-P	Field mustard	cytosol	44.1	60.52
CDX98955	Canola	cytoskeleton, cytosol, nucleus	44.34	60.45
CDX73835	Canola	nucleus	44.58	58.7
CDX70068	Canola	cytoskeleton, cytosol, nucleus	38.92	58.51
Bra001437.1-P	Field mustard	cytoskeleton, cytosol, nucleus	43.63	55.39
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	41.04	54.38
Bra038698.1-P	Field mustard	extracellular	45.28	50.0
AT3G12140.3	Thale cress	cytosol	44.58	49.35
CDY50571	Canola	extracellular	44.58	47.01
KRG93077	Soybean	nucleus	45.99	46.65
CDY42126	Canola	cytosol	28.54	46.18
KRH36326	Soybean	nucleus	34.2	45.74
GSMUA_Achr11P...	Banana	nucleus	26.89	45.42
KRH27522	Soybean	nucleus	45.75	44.5
KRH36382	Soybean	nucleus	45.52	41.06
Os08t0328300-02	Rice	nucleus	43.63	40.39
KRH13882	Soybean	nucleus	41.04	40.18
Zm00001d019922_P003	Maize	nucleus	42.45	39.82
OQU89150	Sorghum	nucleus	41.98	39.21
Zm00001d005106_P005	Maize	mitochondrion	41.98	38.61
KRH43436	Soybean	cytosol	39.86	38.5
HORVU5Hr1G053150.1	Barley	nucleus, plastid	42.45	38.05
TraesCS5D01G177600.1	Wheat	nucleus	42.22	37.76
EES14911	Sorghum	nucleus	40.8	37.69
TraesCS5B01G170500.1	Wheat	nucleus	41.98	37.55
TraesCS5A01G173100.1	Wheat	nucleus, plastid	41.75	37.34
Solyc03g063280.2.1	Tomato	nucleus	38.68	35.73
PGSC0003DMT400046911	Potato	cytoskeleton, cytosol, nucleus	13.21	35.44
Os09t0279000-01	Rice	mitochondrion	42.92	35.27
Zm00001d050116_P003	Maize	nucleus	37.97	35.15
CDY00757	Canola	cytosol	45.99	27.7
KXG35268	Sorghum	mitochondrion, nucleus	33.96	23.26
KRG94907	Soybean	cytosol	16.98	22.64

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.1	UniProt:A0A0R0L3Y5	EMBL:ACUP02001122	InterPro:Agenet_dom_plant	ncoils:Coil
InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	EnsemblPlantsGene:GLYMA_02G178800	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	InterPro:IPR005491	EnsemblPlants:KRH71929	ProteinID:KRH71929
ProteinID:KRH71929.1	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7	SMART:SM00743
SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI0006EDF09E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:30282810..30290519

Molecular Weight (calculated)

47419.3 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.713

Length

424 amino acids

Sequence
(BLAST)

001: MTRENQNSKH TLETRNTLSH CPFLSPKLKT KTHFLLQNLR LFSNRNALRN ISSSLSHIFH CSNFHALSNS DTTGIGSLPQ IKIEFGEEAY SAVLRAFKAQ
101: SDALTWEKEG LITELRKELR VSDDEHRELL TRVNSDEIIH RIREWRQTGC YQPARRSTSQ TFHDILPSPT VSASRKKQKT SHSGQSLPAL SSVKSVQYTS
201: AGPTGGRHFA NHNSSALASN ASATEAAAFD PLIGKKVWTR WPEDNHFYEA VVTDYNPADG RHALVYDINK VNETWEWVDL KEISPEDIKW EGEDPGILHR
301: GGHGGQGGGG RKFFGHGGDS LGAGRGRGHP RFQARQEFLP PQNGIGRRVL DDIELLNTDS LVKEVERIFA TSPQDSMELE KAKQMLKEHE QALVDAIARI
401: ADASDGESDG EQPFLQHSQL MERG

Best Arabidopsis Sequence Match ( AT3G12140.2 )
(BLAST)

001: METQIHQLEQ EAYTAVLRAF KAQSDAISWE KESLITELRK ELRVSDDEHR ELLSRVNKDD TIQRIRDWRQ GGASQITRHA TIQPFDVLPS PTFSAARKKQ
101: KTFPSYNPSI GATGNRSFNN RLVSSGISGN ESAEALIGRK VWTKWPEDNH FYEAIITQYN ADEGRHALVY DIHAANETWE WVDLKEIPPE DIRWDGEESG
201: VALNIGHGSA SFRGNRRGQI HGGRGRGPRI HQPRRELVPP PTQQNGSGGR RTSSDDIELF NTDSLVKEVE RVFDSTHPDP LELDKAKKML KEHEQALIAA
301: IARLADTSDG EMDGDPPYSH DHPMPQG

Arabidopsis Description

EML1 [Source:UniProtKB/TrEMBL;Acc:A0A178VB56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.