CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, cytoskeleton

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72246
CDX83793
CDX83796
CDX96685
CDY08765
CDY37838
CDY39208
CDY45614
CDY52535

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06780.1	CDX83793	AT1G19010.1	21798944
AT5G06780.1	CDX83796	AT1G19010.1	21798944
AT5G06780.1	CDX96685	AT1G19010.1	21798944
AT5G06780.1	CDX72246	AT4G30490.1	21798944
AT5G06780.1	CDY39208	AT4G30490.1	21798944
AT5G06780.1	CDY08765	AT5G65683.1	21798944
AT5G06780.1	CDY37838	AT5G65683.1	21798944
AT5G06780.1	CDY45614	AT5G65683.1	21798944
AT5G06780.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009226.1-P	Field mustard	cytosol	85.46	77.99
CDX98955	Canola	cytoskeleton, cytosol, nucleus	84.4	76.53
AT5G06780.1	Thale cress	cytoskeleton, cytosol, nucleus	69.15	60.94
CDX73835	Canola	nucleus	67.73	59.32
KRH38126	Soybean	nucleus	61.35	51.95
CDY50571	Canola	extracellular	65.25	45.77
GSMUA_Achr11P...	Banana	nucleus	39.36	44.22
CDY42126	Canola	cytosol	40.07	43.13
CDY17848	Canola	cytoskeleton, cytosol, nucleus	17.73	40.65
CDX70488	Canola	nucleus	53.9	39.58
CDX78501	Canola	nucleus	53.9	39.18
CDX85675	Canola	nucleus	54.26	39.13
KRH71929	Soybean	nucleus	58.51	38.92
CDX97218	Canola	nucleus	56.03	38.26
CDX69677	Canola	nucleus	55.67	38.01
Os08t0328300-02	Rice	nucleus	53.9	33.19
Zm00001d019922_P003	Maize	nucleus	52.84	32.96
OQU89150	Sorghum	nucleus	52.13	32.38
HORVU5Hr1G053150.1	Barley	nucleus, plastid	53.9	32.14
TraesCS5A01G173100.1	Wheat	nucleus, plastid	53.9	32.07
TraesCS5D01G177600.1	Wheat	nucleus	53.9	32.07
TraesCS5B01G170500.1	Wheat	nucleus	53.55	31.86
EES14911	Sorghum	nucleus	51.77	31.81
Zm00001d050116_P003	Maize	nucleus	51.06	31.44
Solyc03g063280.2.1	Tomato	nucleus	51.06	31.37
CDY68247	Canola	nucleus	43.97	31.16
Zm00001d005106_P005	Maize	mitochondrion	50.35	30.8
CDY17849	Canola	plastid	30.85	29.79
Os09t0279000-01	Rice	mitochondrion	52.13	28.49
CDY00757	Canola	cytosol	67.38	26.99
CDX95603	Canola	nucleus	47.87	23.68
CDX91150	Canola	nucleus	55.67	22.99
PGSC0003DMT400046911	Potato	cytoskeleton, cytosol, nucleus	12.41	22.15
CDX83427	Canola	nucleus	41.49	22.03
KXG35268	Sorghum	mitochondrion, nucleus	43.62	19.87
CDY45580	Canola	mitochondrion	20.57	17.37

Protein Annotations

Gene3D:1.10.1240.40	MapMan:35.1	InterPro:Agenet_dom_plant	EnsemblPlants:CDX70068	ProteinID:CDX70068	ProteinID:CDX70068.1
ncoils:Coil	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00136171001	InterPro:IPR005491	PFAM:PF03735
PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7	SMART:SM00743	SMART:SM01191	SUPFAM:SSF158639
SUPFAM:SSF63748	UniParc:UPI0004EF2790	:	:	:	:

Description

BnaA10g24170D

Coordinates

chrLK031790:+:2952030..2954019

Molecular Weight (calculated)

32051.5 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.633

Length

282 amino acids

Sequence
(BLAST)

001: MEVEIHILEQ EAYCAVLRAF KAQSDAISWE KESMITELRK ELRVSDDEHR ELLTSVHNDD IIKRIREWRQ GGGNQVVRHV NNQSLDVLPS PAYSASRKKQ
101: KTFQSYPSMG STRSRSFNNH LVSGAVTANE PAEALIGRKV WTKWPEDNSF YEAVITQYNA VEGRHALVYD LNTLNETWEW VDLKEVISKR IDVIPPQDIR
201: WGGEENGAAF AGHGSRRTLS NGGLGRFFDS HLPDLHELDK AKKLLKEHEQ ALVSAIARLA DASDFESDGE EAYMHELPMH EG

Best Arabidopsis Sequence Match ( AT5G06780.2 )
(BLAST)

001: MEAQIHILEQ EAYSAVLRAF QAQADEFSWD KATVMTNLRK ELRISDDENR QLLNNVHNDD LIKRIRDSRP RGGNQVVRHQ SLDVHPSPTF SASRKKQKTF
101: QSYPSIGSTR SKSFNNRVVS ANEPAEALIG RKVWTKWPED NSFYEAVVTQ YNANEGRHAL VYDINTVNET WEWVDLNEIP TKDIRWDGEE DGVTLNVGHG
201: GGTTRGNRRT LSHGGRGRGP RTQPRREHLA TENGGGRKFF GEIELFNTDS LVKEVERVFD SNLPDPHELD KAKKLLKEHE QALIAAIARL TDASDYESDG
301: EEPYSHELPM LLG

Arabidopsis Description

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein [Source:TAIR;Acc:AT5G06780]
SUBAcon: [cytosol,nucleus,cytoskeleton]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.