CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85675	Canola	nucleus	54.9	95.91
CDX97218	Canola	nucleus	51.68	85.47
CDX69677	Canola	nucleus	51.24	84.75
CDX70488	Canola	nucleus	46.71	83.07
CDX78501	Canola	nucleus	46.56	81.96
AT5G13020.1	Thale cress	nucleus	45.24	77.83
CDY17848	Canola	cytoskeleton, cytosol, nucleus	12.45	69.11
KRH36326	Soybean	nucleus	27.38	58.99
KRG93077	Soybean	nucleus	34.41	56.22
CDX70068	Canola	cytoskeleton, cytosol, nucleus	22.99	55.67
CDX98955	Canola	cytoskeleton, cytosol, nucleus	25.33	55.63
VIT_06s0004g01350.t01	Wine grape	nucleus	37.34	53.68
CDX73835	Canola	nucleus	25.18	53.42
GSMUA_AchrUn_...	Banana	nucleus	28.4	50.39
GSMUA_Achr4P13240_001	Banana	nucleus	35.14	49.08
Os08t0328300-02	Rice	nucleus	31.77	47.38
EES14911	Sorghum	nucleus	31.48	46.84
CDY68247	Canola	nucleus	27.23	46.73
OQU89150	Sorghum	nucleus	31.04	46.7
Zm00001d050116_P003	Maize	nucleus	30.6	45.63
Zm00001d019922_P003	Maize	nucleus	30.16	45.58
CDY50571	Canola	extracellular	26.65	45.27
HORVU5Hr1G053150.1	Barley	nucleus, plastid	31.33	45.24
TraesCS5B01G170500.1	Wheat	nucleus	30.89	44.51
Zm00001d005106_P005	Maize	mitochondrion	30.01	44.47
TraesCS5A01G173100.1	Wheat	nucleus, plastid	30.75	44.3
TraesCS5D01G177600.1	Wheat	nucleus	30.75	44.3
CDY42126	Canola	cytosol	16.98	44.27
GSMUA_Achr3P11710_001	Banana	nucleus	30.45	42.62
CDY17849	Canola	plastid	17.86	41.78
GSMUA_Achr4P11340_001	Banana	cytosol	21.96	41.21
Os09t0279000-01	Rice	mitochondrion	30.6	40.5
CDX95603	Canola	nucleus	27.82	33.33
GSMUA_Achr7P06400_001	Banana	cytosol	34.41	32.91
CDX83427	Canola	nucleus	24.89	32.02
KXG35268	Sorghum	mitochondrion, nucleus	25.62	28.27
CDY00757	Canola	cytosol	28.11	27.27
CDY45580	Canola	mitochondrion	12.3	25.15

Protein Annotations

Gene3D:1.10.1240.40	Gene3D:3.40.50.10420	MapMan:7.5.7.5	EnsemblPlants:CDX91150	ProteinID:CDX91150	ProteinID:CDX91150.1
ncoils:Coil	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	InterPro:FTHF_cligase	InterPro:FTHF_cligase-like_sf
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00151943001
InterPro:IPR005491	InterPro:IPR024185	InterPro:NagB/RpiA_transferase-like	PFAM:PF01812	PFAM:PF03735	PFscan:PS51138
PANTHER:PTHR33432	PANTHER:PTHR33432:SF6	SMART:SM01191	SUPFAM:SSF100950	SUPFAM:SSF158639	SUPFAM:SSF63748
TIGRFAMs:TIGR02727	UniParc:UPI0004EEB265	SEG:seg	:	:	:

Description

BnaC02g04470D

Coordinates

chrLK031865:+:1030646..1035584

Molecular Weight (calculated)

76005.3 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.610

Length

683 amino acids

Sequence
(BLAST)

001: MSTTTKSQEE LDSIFKQKRV VRTTVRRSLK AMDPSLRTQQ DDVIQNTVLE APWFKSCRRL CAYVSCKSLN EVDTSRILSK ILQHPVTEKK LYVPWVEDRN
101: SNMRMLHISH MEDLIANSMN ILEPAPVDAL GNEREDVMQA DEPIDLFILP GLAFDRCRRR LGRGGGYYDT FLKRYEDRAK ERGWSNPLMV ALSYSPQILE
201: DGSIPVTPND VMIDALVTPS GVVPFSPRAI ERLWFTLLKT RALVELDRSL IPRFFLFISF PCEASSEKGH QMDYRPSDSS GTDDDLPPSR YQRSGRPAGN
301: GRPSVLNSAP LSRVHNDMET QIHLIEQEAY SSILRAFKAQ SDAITWEKES LITELRKELR VSDEEHRELL SRVNADEMIR RIREWRKGNS FQSGAPQMVH
401: DNAPSPAVSG SRKKQKTSQS IASLAMGAPS PAMHPSMQPS SSAALRRGGP PPGPNTKKPK TSMQFQATGI AGRPQPGAVA NEPDPLVGKK VWTKWPEDNN
501: FYEAVITDYK AAEGRHALVY DMNTVNETWE WVNLKEISPG DIRWEGEDAG VSRKGGHPGQ GRGSTKAMAR GGPAGQASGR GRGSMKIQQH KAQNGVGKKA
601: LGDIEILHTD TLIKEVEKVF RSVNPNPAEV EKAKKVLRDH EQALVDAIAR LEEMSDGESD DGVRALDWLR GVDGGGLVAN VNG

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.