Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073960.2.1 | Tomato | nucleus | 78.47 | 79.39 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 73.15 | 72.98 |
| KRH27522 | Soybean | nucleus | 70.83 | 70.18 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 19.44 | 68.29 |
| KRH36382 | Soybean | nucleus | 69.68 | 64.04 |
| KRH13882 | Soybean | nucleus | 61.57 | 61.43 |
| KRH43436 | Soybean | cytosol | 61.34 | 60.36 |
| Solyc06g009900.1.1 | Tomato | nucleus | 53.7 | 59.34 |
| AT2G44440.1 | Thale cress | nucleus | 53.24 | 53.61 |
| Os08t0328300-02 | Rice | nucleus | 56.02 | 52.84 |
| CDY68247 | Canola | nucleus | 46.99 | 51.01 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 54.63 | 49.79 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 54.4 | 49.68 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 54.17 | 49.37 |
| EES14911 | Sorghum | nucleus | 52.31 | 49.24 |
| OQU89150 | Sorghum | nucleus | 51.16 | 48.68 |
| Zm00001d019922_P003 | Maize | nucleus | 50.93 | 48.67 |
| Bra004832.1-P | Field mustard | cytosol | 45.83 | 48.29 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 52.08 | 47.47 |
| Zm00001d050116_P003 | Maize | nucleus | 50.23 | 47.38 |
| Zm00001d005106_P005 | Maize | mitochondrion | 50.0 | 46.85 |
| CDY17849 | Canola | plastid | 31.48 | 46.58 |
| Os09t0279000-01 | Rice | mitochondrion | 52.31 | 43.8 |
| Solyc03g063280.2.1 | Tomato | nucleus | 40.28 | 37.91 |
| CDX95603 | Canola | nucleus | 48.61 | 36.84 |
| Bra000353.1-P | Field mustard | nucleus | 44.44 | 36.16 |
| CDX83427 | Canola | nucleus | 43.75 | 35.59 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 40.74 | 28.43 |
| Bra041089.1-P | Field mustard | cytosol | 18.06 | 26.0 |
| CDY45580 | Canola | mitochondrion | 19.44 | 25.15 |
| GSMUA_Achr11P... | Banana | plastid | 13.43 | 24.58 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | ncoils:Coil | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf |
| UniProt:G8Z280 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 |
| EMBL:GQ261258 | InterPro:IPR005491 | PFAM:PF03735 | PFscan:PS51138 | PANTHER:PTHR33432 | PANTHER:PTHR33432:SF6 |
| SMART:SM01191 | SUPFAM:SSF158639 | SUPFAM:SSF63748 | EnsemblPlantsGene:Solyc10g044960.1 | EnsemblPlants:Solyc10g044960.1.1 | UniParc:UPI000243C64F |
Description
Hop-interacting protein THI115 [Source:UniProtKB/TrEMBL;Acc:G8Z280]
Coordinates
chr10:+:29054516..29063076
Molecular Weight (calculated)
47657.6 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.889
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYEPYDSSG TDDDLPPSHQ NRIPRGSGRV TGNGRSAVIG SVPYQRMYGE TEMEAQIHQL EQEAYISVLR AFKAQADAIS WEKESLITEL RKELRLSNEE
101: HRELLARVNN DDVIRRIRDW RQSGGHQPSM LGAGQSVHDP TPSPSVSASR KKQKIAQSLP SQSFAGPSPT FHPPPVTAAN QPSSSAAKRG PMVGPKGKKH
201: KSGQMMSGAS SMKMQYPTPG PSGRAQFGNR VSEPVEAASF DPLIGRKVKT RWPDDNNFYE ALITDFNRVE GRHALVYDMG TANETWEWVN LAEISPEDIQ
301: WEGEDPGISH HGNYGGPGRA MTRPAGRDSA PGAGRGRGLT KAHSRKDFPP SQNGLGKKGP DDIKLLHTGT LIREVERIFS SGHPDPQMVE KATKVLKEHE
401: QALLDAISKL GEYSDGESEE RHFMHGQDMD RE
101: HRELLARVNN DDVIRRIRDW RQSGGHQPSM LGAGQSVHDP TPSPSVSASR KKQKIAQSLP SQSFAGPSPT FHPPPVTAAN QPSSSAAKRG PMVGPKGKKH
201: KSGQMMSGAS SMKMQYPTPG PSGRAQFGNR VSEPVEAASF DPLIGRKVKT RWPDDNNFYE ALITDFNRVE GRHALVYDMG TANETWEWVN LAEISPEDIQ
301: WEGEDPGISH HGNYGGPGRA MTRPAGRDSA PGAGRGRGLT KAHSRKDFPP SQNGLGKKGP DDIKLLHTGT LIREVERIFS SGHPDPQMVE KATKVLKEHE
401: QALLDAISKL GEYSDGESEE RHFMHGQDMD RE
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.