Factsheet for Solyc06g009900.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053543	Potato	nucleus	86.44	85.79
Solyc01g073960.2.1	Tomato	nucleus	62.4	57.14
CDY17848	Canola	cytoskeleton, cytosol, nucleus	17.65	56.1
VIT_13s0156g00360.t01	Wine grape	nucleus	60.1	54.27
Solyc10g044960.1.1	Tomato	nucleus	59.34	53.7
KRH27522	Soybean	nucleus	57.54	51.61
KRH36382	Soybean	nucleus	57.29	47.66
KRH13882	Soybean	nucleus	50.64	45.73
KRH43436	Soybean	cytosol	50.13	44.65
Os08t0328300-02	Rice	nucleus	46.55	39.74
AT2G44440.1	Thale cress	nucleus	43.22	39.39
EES14911	Sorghum	nucleus	45.52	38.78
Zm00001d019922_P003	Maize	nucleus	43.99	38.05
CDY68247	Canola	nucleus	38.62	37.94
HORVU5Hr1G053150.1	Barley	nucleus, plastid	45.78	37.84
TraesCS5D01G177600.1	Wheat	nucleus	45.78	37.76
OQU89150	Sorghum	nucleus	43.73	37.67
TraesCS5B01G170500.1	Wheat	nucleus	45.52	37.55
Zm00001d050116_P003	Maize	nucleus	43.73	37.34
TraesCS5A01G173100.1	Wheat	nucleus, plastid	45.01	37.13
Bra004832.1-P	Field mustard	cytosol	38.36	36.59
Zm00001d005106_P005	Maize	mitochondrion	42.2	35.79
CDY17849	Canola	plastid	25.83	34.59
Solyc03g063280.2.1	Tomato	nucleus	39.64	33.77
Os09t0279000-01	Rice	mitochondrion	44.5	33.72
CDX95603	Canola	nucleus	41.69	28.6
CDX83427	Canola	nucleus	37.08	27.31
Bra000353.1-P	Field mustard	nucleus	36.57	26.93
KXG35268	Sorghum	mitochondrion, nucleus	35.81	22.62
Bra041089.1-P	Field mustard	cytosol	16.11	21.0
CDY45580	Canola	mitochondrion	17.14	20.06
GSMUA_Achr11P...	Banana	plastid	11.76	19.49

Protein Annotations

EnsemblPlants:Solyc06g009900.1.1	EnsemblPlantsGene:Solyc06g009900.1	Gene3D:1.10.1240.40	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0050832	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	InterPro:IPR005491
PANTHER:PTHR33432	PFAM:PF03735	PFscan:PS51138	SEG:seg	SMART:SM01191	SUPFAM:SSF158639
SUPFAM:SSF63748	UniParc:UPI00027670A5	UniProt:K4C419	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6:+:4259198..4262553

Molecular Weight (calculated)

43570.8 Da

IEP (calculated)

4.952

GRAVY (calculated)

-0.706

Length

391 amino acids

Sequence
(BLAST)

001: MAYDDTGTDE DLPQSHWSRM PRGGVFGTGG DRAAMMYDET DMEVEIHRLE QEAYSSVLRA FKAQADTITW EKESLISELR KELRLSSDHH REFLGRVNED
101: DVVRRIREWR ISCMRGTGQA VHDQIPSSFV RTNQIIAPYL PSRSFSGPSP SFRPPAASAA NQPSTSTANR DPMMDPKDQI YSTKMQYLSL GPSGRGQSSN
201: QVSEPAEPVS FDPLIGRKVR TRRPDDNNFY EAVIADCNAA EGKHVLVYDG GSANEMSEWV NLKEIPPEDI QWEGEDPGIS HHGNNSQSGR GRDSDPVAVR
301: GLGLTMPQSR TDFPSSHYGI GKKGDDFIVL LRTDMLINEV EKRVFGTSHP DPLEVEKAKE VLTDHEQALV AAISRLDRMI SDADSSMNCA K

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.