Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016200 | Potato | nucleus | 99.06 | 98.83 |
| Solyc10g044960.1.1 | Tomato | nucleus | 79.39 | 78.47 |
| VIT_13s0156g00360.t01 | Wine grape | nucleus | 75.41 | 74.36 |
| CDY17848 | Canola | cytoskeleton, cytosol, nucleus | 20.61 | 71.54 |
| KRH27522 | Soybean | nucleus | 72.83 | 71.33 |
| KRH13882 | Soybean | nucleus | 67.68 | 66.74 |
| KRH36382 | Soybean | nucleus | 72.6 | 65.96 |
| KRH43436 | Soybean | cytosol | 66.98 | 65.15 |
| Solyc06g009900.1.1 | Tomato | nucleus | 57.14 | 62.4 |
| AT2G44440.1 | Thale cress | nucleus | 56.67 | 56.41 |
| Os08t0328300-02 | Rice | nucleus | 56.44 | 52.62 |
| CDY68247 | Canola | nucleus | 48.95 | 52.51 |
| Bra004832.1-P | Field mustard | cytosol | 48.01 | 50.0 |
| OQU89150 | Sorghum | nucleus | 52.93 | 49.78 |
| Zm00001d019922_P003 | Maize | nucleus | 52.46 | 49.56 |
| EES14911 | Sorghum | nucleus | 53.16 | 49.46 |
| TraesCS5B01G170500.1 | Wheat | nucleus | 54.57 | 49.16 |
| HORVU5Hr1G053150.1 | Barley | nucleus, plastid | 54.33 | 49.05 |
| TraesCS5D01G177600.1 | Wheat | nucleus | 54.33 | 48.95 |
| CDY17849 | Canola | plastid | 33.02 | 48.29 |
| TraesCS5A01G173100.1 | Wheat | nucleus, plastid | 52.46 | 47.26 |
| Zm00001d005106_P005 | Maize | mitochondrion | 50.82 | 47.07 |
| Zm00001d050116_P003 | Maize | nucleus | 49.88 | 46.51 |
| Os09t0279000-01 | Rice | mitochondrion | 52.46 | 43.41 |
| Solyc03g063280.2.1 | Tomato | nucleus | 44.5 | 41.39 |
| CDX95603 | Canola | nucleus | 50.12 | 37.54 |
| CDX83427 | Canola | nucleus | 44.73 | 35.97 |
| Bra000353.1-P | Field mustard | nucleus | 44.73 | 35.97 |
| KXG35268 | Sorghum | mitochondrion, nucleus | 42.15 | 29.08 |
| GSMUA_Achr11P... | Banana | plastid | 14.99 | 27.12 |
| Bra041089.1-P | Field mustard | cytosol | 18.5 | 26.33 |
| CDY45580 | Canola | mitochondrion | 19.67 | 25.15 |
Protein Annotations
| Gene3D:1.10.1240.40 | MapMan:35.1 | ncoils:Coil | InterPro:EMSY-LIKE_plant | InterPro:ENT_dom | InterPro:ENT_dom-like_sf |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0050832 | InterPro:IPR005491 |
| UniProt:K4AXE1 | PFAM:PF03735 | PFscan:PS51138 | PANTHER:PTHR33432 | PANTHER:PTHR33432:SF6 | SMART:SM01191 |
| SUPFAM:SSF158639 | SUPFAM:SSF63748 | EnsemblPlantsGene:Solyc01g073960.2 | EnsemblPlants:Solyc01g073960.2.1 | UniParc:UPI0002761946 | SEG:seg |
Description
No Description!
Coordinates
chr1:-:81306044..81312380
Molecular Weight (calculated)
46885.9 Da
IEP (calculated)
7.151
GRAVY (calculated)
-0.885
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYEPYDSSG TDDDLPPSHQ NRIPRGGGRM NGNGRSAVMA SVPYQRMYGE TDMEAQIHQL EQEAYSSVLR AFKAQADAIS WEKESLITEL RKELRLSNEE
101: HRELLGRVNA DDVIRRIREW RQSGAQQPGM LGTGQAIHDP LPSPSVSASR KKQKIAPPLP SQSFAGPSPT FHPPALAAAN QPSSSAAKRG PMMGPKGKKS
201: KSGQMMPGAS SMKMQYPPSG PFGRGQLDNR VSESAKAPVD SLIGRKVRTR WPDDNNFYEA VITDYNKAEG RHALVYDMST ANETWEWVNL SEISPEDIQW
301: DGEDPGISRH GNYGGSGRGV NRPVGRDSGP GAGRGRGLAK PQSRKGFPPS QNGGRKGSDD IQLLHTDTLI KEVERVFGAS HPDPLEVEKA KKVLKEHEQA
401: LLEAISRLGE ISDGESDEHF MQAMNRE
101: HRELLGRVNA DDVIRRIREW RQSGAQQPGM LGTGQAIHDP LPSPSVSASR KKQKIAPPLP SQSFAGPSPT FHPPALAAAN QPSSSAAKRG PMMGPKGKKS
201: KSGQMMPGAS SMKMQYPPSG PFGRGQLDNR VSESAKAPVD SLIGRKVRTR WPDDNNFYEA VITDYNKAEG RHALVYDMST ANETWEWVNL SEISPEDIQW
301: DGEDPGISRH GNYGGSGRGV NRPVGRDSGP GAGRGRGLAK PQSRKGFPPS QNGGRKGSDD IQLLHTDTLI KEVERVFGAS HPDPLEVEKA KKVLKEHEQA
401: LLEAISRLGE ISDGESDEHF MQAMNRE
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
Arabidopsis Description
EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.