Factsheet for VIT_13s0156g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073960.2.1	Tomato	nucleus	74.36	75.41
PGSC0003DMT400016200	Potato	nucleus	74.36	75.23
KRH27522	Soybean	nucleus	75.29	74.77
CDY17848	Canola	cytoskeleton, cytosol, nucleus	20.79	73.17
Solyc10g044960.1.1	Tomato	nucleus	72.98	73.15
KRH36382	Soybean	nucleus	75.98	70.0
KRH13882	Soybean	nucleus	69.98	69.98
KRH43436	Soybean	cytosol	67.9	66.97
PGSC0003DMT400053543	Potato	nucleus	55.89	61.42
Solyc06g009900.1.1	Tomato	nucleus	54.27	60.1
VIT_08s0007g06350.t01	Wine grape	nucleus	63.74	57.14
VIT_06s0004g01350.t01	Wine grape	nucleus	61.43	56.0
AT2G44440.1	Thale cress	nucleus	54.04	54.55
CDY68247	Canola	nucleus	50.12	54.52
Os08t0328300-02	Rice	nucleus	57.27	54.15
Bra004832.1-P	Field mustard	cytosol	49.19	51.95
EES14911	Sorghum	nucleus	54.97	51.85
TraesCS5D01G177600.1	Wheat	nucleus	55.89	51.05
HORVU5Hr1G053150.1	Barley	nucleus, plastid	55.66	50.95
TraesCS5B01G170500.1	Wheat	nucleus	55.43	50.63
Zm00001d050116_P003	Maize	nucleus	52.66	49.78
CDY17849	Canola	plastid	33.49	49.66
OQU89150	Sorghum	nucleus	51.96	49.56
TraesCS5A01G173100.1	Wheat	nucleus, plastid	54.04	49.37
Zm00001d019922_P003	Maize	nucleus	50.58	48.45
Zm00001d005106_P005	Maize	mitochondrion	49.42	46.42
Os09t0279000-01	Rice	mitochondrion	54.27	45.54
CDX95603	Canola	nucleus	49.19	37.37
Bra000353.1-P	Field mustard	nucleus	44.8	36.53
CDX83427	Canola	nucleus	44.57	36.35
VIT_08s0056g01450.t01	Wine grape	cytosol, mitochondrion, nucleus	18.01	30.35
KXG35268	Sorghum	mitochondrion, nucleus	41.34	28.92
GSMUA_Achr11P...	Banana	plastid	15.24	27.97
Bra041089.1-P	Field mustard	cytosol	19.17	27.67
CDY45580	Canola	mitochondrion	20.32	26.35

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100263217	wikigene:100263217	Gene3D:2.30.30.140	MapMan:35.1	ProteinID:CBI32175
ProteinID:CBI32175.3	ncoils:Coil	UniProt:D7TNV2	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf
EMBL:FN596003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	GO:GO:0071949	InterPro:IPR005491	EntrezGene:LOC100263217
wikigene:LOC100263217	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF6	SMART:SM01191
SUPFAM:SSF158639	SUPFAM:SSF63748	TIGR:TC60942	UniParc:UPI00015CC9F9	ArrayExpress:VIT_13s0156g00360	EnsemblPlantsGene:VIT_13s0156g00360
EnsemblPlants:VIT_13s0156g00360.t01	unigene:Vvi.5934	RefSeq:XP_002273408	RefSeq:XP_002273408.2	RefSeq:XP_010659559.1	:

Description

No Description!

Coordinates

chr13:-:24074024..24081234

Molecular Weight (calculated)

47392.2 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.813

Length

433 amino acids

Sequence
(BLAST)

001: MDYEPFDSSG TDDDLPPPHQ NRIPRGGRVA GNGRSAVVGS IPYSRMYGET DMETQIHQLE QEAYSSVLRA FKAQADAITW EKESLITELR KELRLSNEEH
101: RELLGRVNAD DVIRRIREWR QAGGLQPGML TTGQAVHDPI PSPTVSASRK KQKITQSIPS QSFGGPSQSF HPQAIAASNQ PSSSAAKRGP ILGPKGKKHK
201: SVLPGASSMK SMQYASSGPT GRGQVANRGV NEPAEAATFD PLIGRKVRTR WPDDNNFYEA VITDYNPVEG RHALVYDMGS ANETWEWVNL SEISPEDIQW
301: DGEDPGISRR GGYDGSGHGM NRAVGRDSVQ GAGRGRGLPK GQSKKDFLPS QNGIGKKAPD DIQILHTDTL IKEVERVFTA NHPDPLEIDK AKKVLKEHEQ
401: ALLDAIGRLA DISDGESDEG GHQFSHGHSM DRE

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.