Factsheet for VIT_08s0007g06350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0156g00360.t01	Wine grape	nucleus	57.14	63.74
VIT_06s0004g01350.t01	Wine grape	nucleus	55.49	56.42
Os08t0328300-02	Rice	nucleus	53.42	56.33
EES14911	Sorghum	nucleus	49.48	52.07
TraesCS5B01G170500.1	Wheat	nucleus	50.93	51.9
TraesCS5D01G177600.1	Wheat	nucleus	50.72	51.69
HORVU5Hr1G053150.1	Barley	nucleus, plastid	50.31	51.37
OQU89150	Sorghum	nucleus	47.62	50.66
TraesCS5A01G173100.1	Wheat	nucleus, plastid	49.48	50.42
Zm00001d019922_P003	Maize	nucleus	46.58	49.78
Zm00001d050116_P003	Maize	nucleus	46.38	48.91
Zm00001d005106_P005	Maize	mitochondrion	44.93	47.07
Os09t0279000-01	Rice	mitochondrion	49.9	46.71
VIT_08s0056g01450.t01	Wine grape	cytosol, mitochondrion, nucleus	15.94	29.96
KXG35268	Sorghum	mitochondrion, nucleus	36.02	28.11

Protein Annotations

Gene3D:1.10.1240.40	EntrezGene:100253804	wikigene:100253804	MapMan:35.1	ProteinID:CBI30031	ProteinID:CBI30031.3
ncoils:Coil	UniProt:D7TIF5	InterPro:EMSY-LIKE_plant	InterPro:ENT_dom	InterPro:ENT_dom-like_sf	EMBL:FN595991
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0050832	InterPro:IPR005491
EntrezGene:LOC100253804	wikigene:LOC100253804	PFAM:PF03735	PFscan:PS51138	PANTHER:PTHR33432	PANTHER:PTHR33432:SF7
SMART:SM01191	SUPFAM:SSF158639	SUPFAM:SSF63748	UniParc:UPI0001983E16	ArrayExpress:VIT_08s0007g06350	EnsemblPlantsGene:VIT_08s0007g06350
EnsemblPlants:VIT_08s0007g06350.t01	unigene:Vvi.15266	RefSeq:XP_002275316	RefSeq:XP_002275316.2	RefSeq:XP_002275316.3	SEG:seg

Description

No Description!

Coordinates

chr8:+:20117803..20131242

Molecular Weight (calculated)

52717.0 Da

IEP (calculated)

5.500

GRAVY (calculated)

-0.854

Length

483 amino acids

Sequence
(BLAST)

001: MDYELSDSSG TDDDLPPSHQ NRGSRGGRVA GNGRSVVGSA PYPRLHSDME TQIHHLEQEA YSSVLRAFKA QSDAITWDKE GLITELRKEL RVSDDEHREL
101: LARVNADNII QRIREWRQAG GHQTAMLSMS QHAHDQIPSP TVSASRKKQK LSQSVPSLSF GVSSQALHPQ SVAPASVQPS PSTMKRGPTL GGRGKKFKPG
201: QPFPGLSSVK SMQYHSSITA GRGQFRTSSG TLTTNEPAEP GTYDPLIGRK VMTLWPEDNN FYEAVITDYN PLEGLHALVY DINTTNETWE WVDLKEISPE
301: DIQWEGEDPG ISRQGGRGGQ GRGVKRSTSR GVALPSAGRG RGSTKVQSNR EFPPSQNGIG KKVSDSDDIE IFHTDTLIKE VERVFGASHP DPVELEKAKK
401: MLKEHEQALV DAISRLGDAS DGESDEEQPL SRGQRMDREQ GWRTGGGGEM AGGMPDGSEG GERMAGVGRT ASDDQQDNDI DDI

Best Arabidopsis Sequence Match ( AT5G13020.1 )
(BLAST)

001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI

Arabidopsis Description

EML3EML3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.