Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
19502382
nucleus: 19621931 plastid: 27992503 plasma membrane: 28056797 |
msms PMID:
19502382
doi
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0104800-01 | Rice | cytosol | 17.45 | 100.0 |
| CDY36317 | Canola | cytosol | 28.04 | 77.47 |
| Zm00001d043584_P001 | Maize | cytosol | 9.16 | 50.79 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 89.56 | 46.06 |
| Bra034166.1-P | Field mustard | cytosol | 87.41 | 42.2 |
| Bra001391.1-P | Field mustard | cytosol | 86.55 | 41.67 |
| Bra034864.1-P | Field mustard | cytosol | 87.55 | 41.13 |
| Bra001286.1-P | Field mustard | cytosol | 86.55 | 40.77 |
| EES07849 | Sorghum | plastid | 97.85 | 40.02 |
| KXG22761 | Sorghum | plastid | 97.57 | 39.88 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 97.28 | 39.65 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 96.85 | 39.64 |
| CDY08549 | Canola | cytosol | 87.55 | 39.61 |
| TraesCS5B01G152300.1 | Wheat | unclear | 96.71 | 39.58 |
| TraesCS5D01G158800.1 | Wheat | plastid | 96.57 | 39.52 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 96.85 | 39.48 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 96.71 | 39.03 |
| Bra029698.1-P | Field mustard | cytosol | 81.55 | 38.54 |
| GSMUA_Achr4P18860_001 | Banana | cytosol | 88.27 | 38.11 |
| HORVU4Hr1G024710.4 | Barley | plastid | 96.71 | 37.96 |
| HORVU5Hr1G048010.1 | Barley | plastid | 96.57 | 37.44 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 90.27 | 37.01 |
| VIT_13s0067g01290.t01 | Wine grape | extracellular | 90.13 | 36.97 |
| GSMUA_Achr4P16770_001 | Banana | cytosol | 90.84 | 36.94 |
| GSMUA_Achr5P08520_001 | Banana | plastid | 89.99 | 36.83 |
| KRH73205 | Soybean | nucleus | 89.56 | 36.67 |
| VIT_06s0004g06860.t01 | Wine grape | cytosol, plastid | 89.41 | 36.66 |
| KRH31163 | Soybean | endoplasmic reticulum | 89.13 | 36.65 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 88.98 | 36.59 |
| KRH14933 | Soybean | nucleus | 88.84 | 36.53 |
| Solyc03g096000.2.1 | Tomato | nucleus | 88.7 | 36.43 |
| CDY07954 | Canola | cytosol | 87.12 | 36.36 |
| Solyc06g051310.2.1 | Tomato | nucleus | 88.41 | 36.33 |
| CDY36301 | Canola | cytosol | 86.84 | 36.13 |
| CDX74011 | Canola | cytosol | 86.7 | 36.11 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 88.13 | 36.11 |
| CDY00724 | Canola | cytosol | 86.55 | 36.01 |
| CDX73889 | Canola | cytosol | 86.55 | 35.95 |
| KRH72708 | Soybean | endoplasmic reticulum, mitochondrion | 87.7 | 35.93 |
| KRH28591 | Soybean | endoplasmic reticulum | 87.41 | 35.9 |
| CDY00997 | Canola | extracellular | 87.55 | 35.85 |
| KRH76885 | Soybean | endoplasmic reticulum | 87.27 | 35.84 |
| AT3G08530.1 | Thale cress | cytosol, plasma membrane, plastid | 87.27 | 35.82 |
| CDY27997 | Canola | cytosol | 81.97 | 35.81 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 87.12 | 35.72 |
| KRH17059 | Soybean | endoplasmic reticulum, nucleus | 86.84 | 35.64 |
| CDY35984 | Canola | cytosol | 81.55 | 35.49 |
| GSMUA_Achr5P14240_001 | Banana | cytosol, plasma membrane, plastid | 84.84 | 34.02 |
| CDY06504 | Canola | extracellular, mitochondrion | 1.43 | 10.64 |
| CDY22157 | Canola | cytosol | 0.57 | 5.13 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 1.29 | 2.93 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 0.43 | 2.59 |
| KRH25762 | Soybean | cytosol | 0.29 | 2.08 |
| KRH12961 | Soybean | cytosol | 0.29 | 2.08 |
| Os12t0104766-00 | Rice | plasma membrane | 0.57 | 0.69 |
| Os11t0104866-00 | Rice | plasma membrane | 0.0 | 0.0 |
| CDY22158 | Canola | cytosol | 0.0 | 0.0 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 0.0 | 0.0 |
| CDY36318 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | MapMan:22.1.1.1 | UniProt:A0A0P0XY45 | InterPro:ARM-type_fold | ProteinID:BAT12302.1 |
| InterPro:Clathrin_H-chain/VPS_repeat | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | InterPro:IPR000547 | InterPro:IPR011990 | EnsemblPlantsGene:Os11g0104900 |
| EnsemblPlants:Os11t0104900-00 | PFAM:PF00637 | PFscan:PS50236 | PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 |
| SUPFAM:SSF48371 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000393B4D7 | SEG:seg | : | : |
Description
Similar to Clathrin heavy chain. (Os11t0104900-00)
Coordinates
chr11:+:241107..244002
Molecular Weight (calculated)
79912.3 Da
IEP (calculated)
4.595
GRAVY (calculated)
-0.179
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: MTADLPHELI ELLEKIVLQN SAFSGNFNLQ NLLILTAIKA DPSRVMDYVN RLDNFDGPAV GEVAVEAQLF EEAFAIFKKF NLNVQAVNVL LDNIRSIERA
101: EEFAFRVEED AVWSQVAKAQ LREGLVSEAI ESFIRADDAT HFLDVIRAAE EANVYDDLVK YLLMVRQKAR EPKVDGELIF AYAKIDRLSD IEEFILMPNV
201: ANLQNVGDRL YDEELYEAAK IIYAFISNWA KLAVTLVKLK QFQGAVDAAR KANSAKTWKE VCFACVDAEE FRLAQICGLN IIVQVDDLEE VSEYYQNRGC
301: FNELISLMES GLGLERAHMG IFTELGVLYA RYRPEKLMEH IKLFSTRLNI PKLIRACDEQ QHWKELTYLY IQYDEFDNAA TTIMNHSPDA WDHMQFKDVA
401: VKVANVELYY KAVHFYLQEH PDLINDLLNV LALRLDHTRV VDIMRKAGQL HLVKPYMVAV QSNNVSAVNE ALNELYVEEE DYERLRESVD MHDNFDQIGL
501: AQKLEKHELL EMRRIAAYIY KKAGRWKQSI ALSKKDNMYK DCMETCSQSG DRELSEDLLV YFIEQGKKEC FASCLFICYD LIRADVALEL AWMNNMVDFA
601: FPYLLQFIRE YTSKVDELVK DRIESQNEVR AKEKEEKDLV AQQNMYAQLL PLALPAPPGM GGPPPPMGMP GMPPMGGMGM PPMGPGPMPA YGMPPMGSY
101: EEFAFRVEED AVWSQVAKAQ LREGLVSEAI ESFIRADDAT HFLDVIRAAE EANVYDDLVK YLLMVRQKAR EPKVDGELIF AYAKIDRLSD IEEFILMPNV
201: ANLQNVGDRL YDEELYEAAK IIYAFISNWA KLAVTLVKLK QFQGAVDAAR KANSAKTWKE VCFACVDAEE FRLAQICGLN IIVQVDDLEE VSEYYQNRGC
301: FNELISLMES GLGLERAHMG IFTELGVLYA RYRPEKLMEH IKLFSTRLNI PKLIRACDEQ QHWKELTYLY IQYDEFDNAA TTIMNHSPDA WDHMQFKDVA
401: VKVANVELYY KAVHFYLQEH PDLINDLLNV LALRLDHTRV VDIMRKAGQL HLVKPYMVAV QSNNVSAVNE ALNELYVEEE DYERLRESVD MHDNFDQIGL
501: AQKLEKHELL EMRRIAAYIY KKAGRWKQSI ALSKKDNMYK DCMETCSQSG DRELSEDLLV YFIEQGKKEC FASCLFICYD LIRADVALEL AWMNNMVDFA
601: FPYLLQFIRE YTSKVDELVK DRIESQNEVR AKEKEEKDLV AQQNMYAQLL PLALPAPPGM GGPPPPMGMP GMPPMGGMGM PPMGPGPMPA YGMPPMGSY
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.