Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0747400-01 | |
| Os06t0226700-01 | |
| Os11t0311300-03 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35250.1 | Os11t0311300-03 | AT1G60080.1 | 21798944 |
| AT4G35250.1 | Os02t0747400-01 | AT3G47620.1 | 21798944 |
| AT4G35250.1 | Os06t0226700-01 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14101 | Sorghum | plastid | 89.38 | 89.61 |
| Zm00001d031997_P001 | Maize | plastid | 87.82 | 88.05 |
| GSMUA_Achr10P... | Banana | cytosol | 79.53 | 87.22 |
| TraesCS7A01G276000.1 | Wheat | plastid | 87.05 | 86.6 |
| TraesCS7B01G173700.1 | Wheat | plastid | 87.05 | 86.6 |
| PGSC0003DMT400048015 | Potato | plastid | 79.27 | 79.27 |
| Solyc01g112060.2.1 | Tomato | plastid | 79.02 | 79.02 |
| TraesCS7D01G275900.1 | Wheat | mitochondrion, plastid | 85.49 | 77.1 |
| AT4G35250.1 | Thale cress | plastid | 78.5 | 76.71 |
| KRH51337 | Soybean | cytosol, nucleus | 69.17 | 76.5 |
| Bra020809.1-P | Field mustard | plastid | 78.24 | 76.46 |
| CDY17531 | Canola | plastid | 78.24 | 76.46 |
| CDY66582 | Canola | plastid | 78.24 | 76.46 |
| KRH60638 | Soybean | nucleus | 77.98 | 76.01 |
| VIT_03s0038g03250.t01 | Wine grape | plastid | 76.42 | 74.31 |
Protein Annotations
| MapMan:1.1.1.3.7.1 | Gene3D:3.40.50.720 | EntrezGene:4346272 | EMBL:AK065711 | EMBL:AK066697 | EMBL:AK104428 |
| EMBL:AK105897 | ProteinID:BAD10223.1 | ProteinID:BAD33006.1 | ProteinID:BAF24376.1 | ProteinID:BAT06620.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009987 | GO:GO:0010207 | GO:GO:0015979 | GO:GO:0016043 | GO:GO:0019538 |
| InterPro:NAD(P)-bd_dom_sf | InterPro:NmrA-like | EnsemblPlantsGene:Os08g0553800 | EnsemblPlants:Os08t0553800-03 | PFAM:PF05368 | PANTHER:PTHR14194 |
| PANTHER:PTHR14194:SF36 | UniProt:Q6Z3F9 | SUPFAM:SSF51735 | UniParc:UPI000023AD21 | RefSeq:XP_015650692.1 | SEG:seg |
Description
NAD(P)-binding domain containing protein. (Os08t0553800-01);NAD(P)-binding domain containing protein. (Os08t0553800-02);NAD(P)-binding domain containing protein. (Os08t0553800-03);NAD(P)-binding domain containing protein. (Os08t0553800-05)
Coordinates
chr8:-:27695184..27700247
Molecular Weight (calculated)
42824.9 Da
IEP (calculated)
8.923
GRAVY (calculated)
-0.078
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSTSLAAL PSQLASPARR AALSRSATAR PRHHHHPLLR APPKGCRLVV TCNAQTAVPT SIAQGTPVRP TSILVVGATG TLGRQVVRRA LDEGYDVRCL
101: VRPRPAPADF LRDWGATVVN ADLSKPETIP ATLVGIHTVI DCATGRPEEP IRTVDWEGKV ALIQCAKAMG IQKYVFYSIH NCDKHPEVPL MEIKHCTEKF
201: IQDAGLDYLI IRLCGFMQGL IGQYAVPILE EKSVWGTDAP TRIAYMDTQD VARLTFIAMR NEKASKKLLT FAGPRAWTTQ EVITLCERLA GQDANVTTVP
301: VAVLRFTRQL TRFFQWTNDV ADRLAFSEVL SSDTIFSVPM NDTYQLLGVD SKDILTLEKY LQDYFTNILK KLKDLKAQSK QTDIFF
101: VRPRPAPADF LRDWGATVVN ADLSKPETIP ATLVGIHTVI DCATGRPEEP IRTVDWEGKV ALIQCAKAMG IQKYVFYSIH NCDKHPEVPL MEIKHCTEKF
201: IQDAGLDYLI IRLCGFMQGL IGQYAVPILE EKSVWGTDAP TRIAYMDTQD VARLTFIAMR NEKASKKLLT FAGPRAWTTQ EVITLCERLA GQDANVTTVP
301: VAVLRFTRQL TRFFQWTNDV ADRLAFSEVL SSDTIFSVPM NDTYQLLGVD SKDILTLEKY LQDYFTNILK KLKDLKAQSK QTDIFF
001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF
Arabidopsis Description
HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.