CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86521
CDY06642
CDY10200
CDY15579
CDY24170
CDY33620
CDY36943
CDY56983
CDY63123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	CDX86521	AT1G06460.1	21798944
AT4G35250.1	CDY06642	AT1G06460.1	21798944
AT4G35250.1	CDY10200	AT1G06460.1	21798944
AT4G35250.1	CDY15579	AT1G06460.1	21798944
AT4G35250.1	CDY33620	AT1G60080.1	21798944
AT4G35250.1	CDY56983	AT1G60080.1	21798944
AT4G35250.1	CDY63123	AT1G60080.1	21798944
AT4G35250.1	CDY24170	AT3G47620.1	21798944
AT4G35250.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020809.1-P	Field mustard	plastid	100.0	100.0
CDY17531	Canola	plastid	99.24	99.24
AT4G35250.1	Thale cress	plastid	94.43	94.43
GSMUA_Achr10P...	Banana	cytosol	75.44	84.66
EES14101	Sorghum	plastid	77.97	80.0
PGSC0003DMT400048015	Potato	plastid	77.72	79.53
Solyc01g112060.2.1	Tomato	plastid	77.47	79.27
VIT_03s0038g03250.t01	Wine grape	plastid	79.49	79.09
Zm00001d031997_P001	Maize	plastid	76.71	78.7
KRH60638	Soybean	nucleus	78.48	78.28
Os08t0553800-03	Rice	plasma membrane, plastid	76.46	78.24
TraesCS7A01G276000.1	Wheat	plastid	76.71	78.09
TraesCS7B01G173700.1	Wheat	plastid	76.71	78.09
KRH51337	Soybean	cytosol, nucleus	68.1	77.08
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	77.47	71.5

Protein Annotations

EnsemblPlants:CDY66582	EnsemblPlantsGene:GSBRNA2T00054603001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PANTHER:PTHR14194
PANTHER:PTHR14194:SF36	PFAM:PF05368	ProteinID:CDY66582	ProteinID:CDY66582.1	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002545FF1	UniProt:A0A078JMH6	MapMan:1.1.1.3.7.1	:	:	:

Description

BnaA08g30570DBnaA08g30570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMH6]

Coordinates

chrLK035342:-:6816..9222

Molecular Weight (calculated)

43587.6 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.088

Length

395 amino acids

Sequence
(BLAST)

001: MASLRLPAQL VTRGTLNHHN SSSSAAPCVS LSWRRSLTPD NSFPNLPSSS PLNRKPSTVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGVHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKVNGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFTEVLS SDTVFSVPMT ETNSLLGVDQ KDLVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.