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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020809.1-P Field mustard plastid 94.43 94.43
CDY66582 Canola plastid 94.43 94.43
CDY17531 Canola plastid 94.18 94.18
GSMUA_Achr10P... Banana cytosol 75.44 84.66
EES14101 Sorghum plastid 78.73 80.78
VIT_03s0038g03250.t01 Wine grape plastid 80.25 79.85
KRH60638 Soybean nucleus 79.75 79.55
PGSC0003DMT400048015 Potato plastid 77.72 79.53
Zm00001d031997_P001 Maize plastid 77.47 79.48
Solyc01g112060.2.1 Tomato plastid 77.47 79.27
Os08t0553800-03 Rice plasma membrane, plastid 76.71 78.5
TraesCS7A01G276000.1 Wheat plastid 76.71 78.09
TraesCS7B01G173700.1 Wheat plastid 76.71 78.09
KRH51337 Soybean cytosol, nucleus 68.1 77.08
TraesCS7D01G275900.1 Wheat mitochondrion, plastid 77.72 71.73
Protein Annotations
MapMan:1.1.1.3.7.1Gene3D:3.40.50.720EntrezGene:829678UniProt:A0A178UXV2ProteinID:AEE86485.1EMBL:AF462834
ArrayExpress:AT4G35250EnsemblPlantsGene:AT4G35250RefSeq:AT4G35250TAIR:AT4G35250RefSeq:AT4G35250-TAIR-GEnsemblPlants:AT4G35250.1
TAIR:AT4G35250.1EMBL:AY133542ProteinID:CAA18744.1ProteinID:CAB80242.1GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003743GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006091GO:GO:0006412GO:GO:0006413GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009534GO:GO:0009536GO:GO:0009579
GO:GO:0009987GO:GO:0010207GO:GO:0015979GO:GO:0016043GO:GO:0019538InterPro:NAD(P)-bd_dom_sf
RefSeq:NP_195251.1InterPro:NmrA-likeUniProt:O65502ProteinID:OAO98728.1PFAM:PF05368PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025034PO:PO:0025281PANTHER:PTHR14194
PANTHER:PTHR14194:SF36SUPFAM:SSF51735UniParc:UPI000009E710SEG:seg::
Description
HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
Coordinates
chr4:-:16771073..16773456
Molecular Weight (calculated)
43725.8 Da
IEP (calculated)
8.550
GRAVY (calculated)
-0.095
Length
395 amino acids
Sequence
(BLAST)
001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.