Factsheet for GSMUA_Achr10P07300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P03670_001
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P02490_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	GSMUA_Achr3P03670_001	AT1G06460.1	21798944
AT4G35250.1	GSMUA_Achr7P02490_001	AT1G60080.1	21798944
AT4G35250.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT4G35250.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT4G35250.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT4G35250.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0553800-03	Rice	plasma membrane, plastid	87.22	79.53
EES14101	Sorghum	plastid	86.36	78.96
Zm00001d031997_P001	Maize	plastid	85.8	78.44
Solyc01g112060.2.1	Tomato	plastid	85.8	78.24
PGSC0003DMT400048015	Potato	plastid	85.51	77.98
TraesCS7A01G276000.1	Wheat	plastid	84.38	76.55
TraesCS7B01G173700.1	Wheat	plastid	84.38	76.55
KRH51337	Soybean	cytosol, nucleus	75.85	76.5
AT4G35250.1	Thale cress	plastid	84.66	75.44
Bra020809.1-P	Field mustard	plastid	84.66	75.44
CDY66582	Canola	plastid	84.66	75.44
CDY17531	Canola	plastid	84.38	75.19
KRH60638	Soybean	nucleus	84.38	75.0
VIT_03s0038g03250.t01	Wine grape	plastid	83.81	74.31
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	83.81	68.93

Protein Annotations

MapMan:1.1.1.3.7.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010207
GO:GO:0015979	GO:GO:0016043	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G07300_001	EnsemblPlants:GSMUA_Achr10P07300_001	EnsemblPlants:GSMUA_Achr10T07300_001
UniProt:M0RG56	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PFAM:PF05368	PANTHER:PTHR14194	PANTHER:PTHR14194:SF36
SUPFAM:SSF51735	UniParc:UPI0002950814	:	:	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:Projected from Arabidopsis thaliana (AT4G35250) TAIR;Acc:AT4G35250]

Coordinates

chr10:+:17562811..17569079

Molecular Weight (calculated)

39315.8 Da

IEP (calculated)

6.860

GRAVY (calculated)

0.018

Length

352 amino acids

Sequence
(BLAST)

001: MSICEICGRC FAPMLVKCNA QTAVATSLSQ GTPVRPTSIL VVGATGTLGR QVVRRALDEG YDVRCLVRPR PAPADFLRDW GAIVVNGDLS KPETIPATLV
101: GVHTVIDCAT GRPEEPISTV DWEGKVALIQ CAKAMGIQKY VFYSIHNCDK HPEVPLMEIK HCTEKFLQDS GLNYLIIRLC GFMQGLIGQY AVPILEEKSV
201: WGTDAPTRIA YMDTQDISRL TFIAMRNEKI NKELLTFAGP RAWTTQEVIT LCERLAGQDA NVTTVPVSIL KFTRQLTRLF QWTNDVADRL AFSEVLSSDI
301: VFSVPMTETY NLLGVDQKDI VTLERYLQDY FTNILKKLKD LKAQSKQTDI FL

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.