Factsheet for Solyc01g112060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc06g075390.2.1
Solyc07g055720.2.1
Solyc10g080130.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	Solyc07g055720.2.1	AT1G06460.1	21798944
AT4G35250.1	Solyc06g075390.2.1	AT1G60080.1	21798944
AT4G35250.1	Solyc10g080130.1.1	AT1G60080.1	21798944
AT4G35250.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048015	Potato	plastid	97.67	97.67
GSMUA_Achr10P...	Banana	cytosol	78.24	85.8
EES14101	Sorghum	plastid	79.27	79.48
Zm00001d031997_P001	Maize	plastid	79.02	79.22
Os08t0553800-03	Rice	plasma membrane, plastid	79.02	79.02
KRH51337	Soybean	cytosol, nucleus	70.73	78.22
AT4G35250.1	Thale cress	plastid	79.27	77.47
Bra020809.1-P	Field mustard	plastid	79.27	77.47
CDY66582	Canola	plastid	79.27	77.47
KRH60638	Soybean	nucleus	79.27	77.27
CDY17531	Canola	plastid	79.02	77.22
TraesCS7A01G276000.1	Wheat	plastid	76.94	76.55
TraesCS7B01G173700.1	Wheat	plastid	76.94	76.55
VIT_03s0038g03250.t01	Wine grape	plastid	78.24	76.07
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	77.2	69.63

Protein Annotations

MapMan:1.1.1.3.7.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010207
GO:GO:0015979	GO:GO:0016043	GO:GO:0019538	UniProt:K4B467	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like
PFAM:PF05368	PANTHER:PTHR14194	PANTHER:PTHR14194:SF36	SUPFAM:SSF51735	EnsemblPlantsGene:Solyc01g112060.2	EnsemblPlants:Solyc01g112060.2.1
UniParc:UPI0002767AC0	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:98176197..98179450

Molecular Weight (calculated)

42467.4 Da

IEP (calculated)

8.322

GRAVY (calculated)

0.007

Length

386 amino acids

Sequence
(BLAST)

001: MASTLYGHLA TPTLPSRKLS SLSCPTMFHS ALSFSIATTK AKHGSAPKVV CNAQSAPAAL NLAPGTPVRP TSILVVGATG TLGRQVVRRA LDEGYDVRCL
101: VRPRPAPADF LRDWGATVVN ADLSKPETIP ATLVGVHTVI DCATGRPEEP IKTVDWEGKV ALIQCAKAMG IQKFIFFSIH NCDKHPEVPL MEIKHCTEKF
201: LRDSGLNHVV IRLCGFMQGL IGQYAVPILE EKSVWGTDAP TRIAYMDTQD IARLTFIALR NENINGKLLT FAGPRAWTTQ EVITLCERLA GQDANVTTVP
301: VSVLRFTRQL TRLFEWTNDV ADRLAFSEVL TSDTVFSVPM AETYNLLGVD AKDVSSLEKY LQDYFTNILK KLKDLKAQSK QTDIFF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.