CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01293
KRH01295
KRH01298
KRH03466
KRH14447
KRH16280
KRH45053
KRH54542
KRH56919
KRH63357
KRH73706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	KRH14447	AT1G06460.1	21798944
AT4G35250.1	KRH73706	AT1G06460.1	21798944
AT4G35250.1	KRH01293	AT1G60080.1	21798944
AT4G35250.1	KRH01295	AT1G60080.1	21798944
AT4G35250.1	KRH01298	AT1G60080.1	21798944
AT4G35250.1	KRH16280	AT1G60080.1	21798944
AT4G35250.1	KRH45053	AT1G60080.1	21798944
AT4G35250.1	KRH03466	AT3G47620.1	21798944
AT4G35250.1	KRH54542	AT3G47620.1	21798944
AT4G35250.1	KRH56919	AT3G47620.1	21798944
AT4G35250.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	75.0	84.38
KRH51337	Soybean	cytosol, nucleus	72.98	82.81
AT4G35250.1	Thale cress	plastid	79.55	79.75
Solyc01g112060.2.1	Tomato	plastid	77.27	79.27
PGSC0003DMT400048015	Potato	plastid	77.02	79.02
EES14101	Sorghum	plastid	76.52	78.7
Bra020809.1-P	Field mustard	plastid	78.28	78.48
CDY66582	Canola	plastid	78.28	78.48
CDY17531	Canola	plastid	78.03	78.23
Os08t0553800-03	Rice	plasma membrane, plastid	76.01	77.98
Zm00001d031997_P001	Maize	plastid	75.76	77.92
VIT_03s0038g03250.t01	Wine grape	plastid	77.27	77.08
TraesCS7A01G276000.1	Wheat	plastid	73.99	75.52
TraesCS7B01G173700.1	Wheat	plastid	73.99	75.52
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	74.24	68.69

Protein Annotations

EMBL:ACUP02002135	EnsemblPlants:KRH60638	EnsemblPlantsGene:GLYMA_04G001500	EntrezGene:100797608	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:NmrA-like	PANTHER:PTHR14194	PANTHER:PTHR14194:SF36	PFAM:PF05368	ProteinID:KRH60638	ProteinID:KRH60638.1
SUPFAM:SSF51735	UniParc:UPI00023C119D	UniProt:I1JSB6	MapMan:1.1.1.3.7.1	:	:

Description

hypothetical protein

Coordinates

chr4:+:123590..128614

Molecular Weight (calculated)

44005.2 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.071

Length

396 amino acids

Sequence
(BLAST)

001: MKMALLKVHA PTPTPTSASA QLQWRCSVSV APTTLAFPNS YSISAERGRR EWNWRVKCSS SSAEIEKGAA SFGPGSPVRA TNILVVGATG TLGRQIVRRA
101: LDEGYDVRCL VRPRPAPADF LRDWGATVVN ADLSKPETIP ATLVGIHTVI DCATGRPEEP IKTVDWEGKV ALIQCAKAMG IQKYVFYSIH NCDKHPEVPL
201: MEIKFCTEKF LRDSGLNHVI IRLCGFMQGL IGQYAVPILE EKSVWGTDAP TRIAYMDTQD IARLTFIAIR NDKLNGKLLT FAGPRAWTTQ EVITLCERLA
301: GQDANVTTVP VSILRLTRQL TRFFEWTNDV ADRLAFSEVL TSDTVFSVPM AETYSLLGVD SKDIVTLEKY LQDYFTNILK KLKDLKAQSK QTDIIF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.