Factsheet for TraesCS7D01G275900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G239300.1
TraesCS4B01G075600.1
TraesCS4D01G074300.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	TraesCS4A01G239300.1	AT1G60080.1	21798944
AT4G35250.1	TraesCS4B01G075600.1	AT1G60080.1	21798944
AT4G35250.1	TraesCS4D01G074300.1	AT1G60080.1	21798944
AT4G35250.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT4G35250.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT4G35250.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT4G35250.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT4G35250.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G173700.1	Wheat	plastid	81.54	89.95
TraesCS7A01G276000.1	Wheat	plastid	81.31	89.69
Os08t0553800-03	Rice	plasma membrane, plastid	77.1	85.49
EES14101	Sorghum	plastid	76.17	84.68
Zm00001d031997_P001	Maize	plastid	75.7	84.16
GSMUA_Achr10P...	Banana	cytosol	68.93	83.81
AT4G35250.1	Thale cress	plastid	71.73	77.72
Bra020809.1-P	Field mustard	plastid	71.5	77.47
CDY17531	Canola	plastid	71.5	77.47
CDY66582	Canola	plastid	71.5	77.47
PGSC0003DMT400048015	Potato	plastid	69.63	77.2
Solyc01g112060.2.1	Tomato	plastid	69.63	77.2
VIT_03s0038g03250.t01	Wine grape	plastid	69.39	74.81
KRH60638	Soybean	nucleus	68.69	74.24
KRH51337	Soybean	cytosol, nucleus	60.51	74.21

Protein Annotations

MapMan:1.1.1.3.7.1	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979
GO:GO:0016043	GO:GO:0019538	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PFAM:PF05368	PANTHER:PTHR14194
PANTHER:PTHR14194:SF36	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS7D01G275900	EnsemblPlants:TraesCS7D01G275900.1	TIGR:cd05243	SEG:seg

Description

No Description!

Coordinates

chr7D:-:264489339..264492298

Molecular Weight (calculated)

47238.1 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.128

Length

428 amino acids

Sequence
(BLAST)

001: MAATTWRDGH RLLRIHSPPL LHSLPSPNPK PRASPPRHAK AYAREMATST SLAAALPSRL TSPGRRAALS WATSCARPHP ARAVSSGCRL VVTCNAQAAA
101: PISIGQGTPV RPTSVLVVGA TGTLGRQVVR RALDEGYDVR CLVRPRPAPA DFLRDWGATV VNADLSKPET IPATLVGVHT VIDCATGRPE EPIRTVDWEG
201: KVALIQCAKA MGIQKYVFYS IHNCDKHPEV PLMEIKYCTE RFIQDTGLDY TIIRLCGFMQ GLIGQYAVPI LEEKSVWGTD APTRIAYMDT QDVARLTFVA
301: LRNEKASKKL LTFAGPRAWT TQEVITLCER LAGQDANVTT VPVAVLRFTR QLTRFFQWTN DVADRLAFSE VLSSDTVFSA PMNETYQLLG VEAKDILTLE
401: KYLQDYFSNI LKKLKGLKAQ SKQSDIYF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.