CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 2
cytosol 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01293
KRH01295
KRH01298
KRH03466
KRH14447
KRH16280
KRH45053
KRH54542
KRH56919
KRH63357
KRH73706

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	KRH14447	AT1G06460.1	21798944
AT4G35250.1	KRH73706	AT1G06460.1	21798944
AT4G35250.1	KRH01293	AT1G60080.1	21798944
AT4G35250.1	KRH01295	AT1G60080.1	21798944
AT4G35250.1	KRH01298	AT1G60080.1	21798944
AT4G35250.1	KRH16280	AT1G60080.1	21798944
AT4G35250.1	KRH45053	AT1G60080.1	21798944
AT4G35250.1	KRH03466	AT3G47620.1	21798944
AT4G35250.1	KRH54542	AT3G47620.1	21798944
AT4G35250.1	KRH56919	AT3G47620.1	21798944
AT4G35250.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	76.5	75.85
KRH60638	Soybean	nucleus	82.81	72.98
PGSC0003DMT400048015	Potato	plastid	78.51	70.98
Solyc01g112060.2.1	Tomato	plastid	78.22	70.73
EES14101	Sorghum	plastid	77.08	69.87
Os08t0553800-03	Rice	plasma membrane, plastid	76.5	69.17
Zm00001d031997_P001	Maize	plastid	76.22	69.09
AT4G35250.1	Thale cress	plastid	77.08	68.1
Bra020809.1-P	Field mustard	plastid	77.08	68.1
CDY66582	Canola	plastid	77.08	68.1
CDY17531	Canola	plastid	76.5	67.59
TraesCS7A01G276000.1	Wheat	plastid	74.79	67.27
TraesCS7B01G173700.1	Wheat	plastid	74.79	67.27
VIT_03s0038g03250.t01	Wine grape	plastid	76.22	67.0
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	74.21	60.51

Protein Annotations

EMBL:ACUP02003370	EnsemblPlants:KRH51337	EnsemblPlantsGene:GLYMA_06G001000	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like
PANTHER:PTHR14194	PANTHER:PTHR14194:SF36	PFAM:PF05368	ProteinID:KRH51337	ProteinID:KRH51337.1	SUPFAM:SSF51735
UniParc:UPI000296A7A0	UniProt:K7KS94	MapMan:1.1.1.3.7.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:111625..114172

Molecular Weight (calculated)

39333.7 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.169

Length

349 amino acids

Sequence
(BLAST)

001: MNMMKVWDAA QGTHNHNDIW HCPTAMAVQC KCSNHHTGVS GGKRRMELEG EMQQGRRVLG LGRQIVRRAL DEGYDVRCLV RPRPAPADFL RDWGATVVNF
101: LFHSYKPETI PATLVGIHTV IDCATGRPEE PIKTEGKVAL IQCAKAMGIQ KYVFYSIHNC DKHPEVPLME IKFCIEKFLR DSGLNHVIIR LCGFMQGLIG
201: QYAVPILEEK SVWGTDAPTR IAYMDTQDIA RLTFIAIRND KLNGKLLTFA GPRAWTTQEV ITLCERLAGQ DANVTTVPWT NDVADRLAFS EVLTSDTVFS
301: VPMAETYNLL GVDSKDIVTL EKYLQDYFTN ILKKLKDLKA QSKQTDIIF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.