Factsheet for Zm00001d031997_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d021033_P001
Zm00001d031643_P001
Zm00001d037221_P001
Zm00001d044450_P001
Zm00001d044836_P001
Zm00001d049854_P001
Zm00001d049855_P002
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	Zm00001d021033_P001	AT1G60080.1	21798944
AT4G35250.1	Zm00001d031643_P001	AT1G60080.1	21798944
AT4G35250.1	Zm00001d044450_P001	AT1G60080.1	21798944
AT4G35250.1	Zm00001d049854_P001	AT1G60080.1	21798944
AT4G35250.1	Zm00001d049855_P002	AT1G60080.1	21798944
AT4G35250.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT4G35250.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT4G35250.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT4G35250.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14101	Sorghum	plastid	96.1	96.1
Os08t0553800-03	Rice	plasma membrane, plastid	88.05	87.82
GSMUA_Achr10P...	Banana	cytosol	78.44	85.8
TraesCS7A01G276000.1	Wheat	plastid	83.64	82.99
TraesCS7B01G173700.1	Wheat	plastid	83.64	82.99
PGSC0003DMT400048015	Potato	plastid	79.48	79.27
Solyc01g112060.2.1	Tomato	plastid	79.22	79.02
AT4G35250.1	Thale cress	plastid	79.48	77.47
Bra020809.1-P	Field mustard	plastid	78.7	76.71
CDY66582	Canola	plastid	78.7	76.71
CDY17531	Canola	plastid	78.44	76.46
KRH51337	Soybean	cytosol, nucleus	69.09	76.22
KRH60638	Soybean	nucleus	77.92	75.76
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	84.16	75.7
VIT_03s0038g03250.t01	Wine grape	plastid	76.88	74.56

Protein Annotations

MapMan:1.1.1.3.7.1	EntrezGene:100192036	Gene3D:3.40.50.720	UniProt:B4FB27	EMBL:BT034315	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	GO:GO:0019538
InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	ProteinID:ONM04192.1	PFAM:PF05368	PANTHER:PTHR14194	PANTHER:PTHR14194:SF36
SUPFAM:SSF51735	UniParc:UPI00017B68E1	EnsemblPlantsGene:Zm00001d031997	EnsemblPlants:Zm00001d031997_P001	EnsemblPlants:Zm00001d031997_T001	SEG:seg

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chr1:+:209095982..209098528

Molecular Weight (calculated)

42681.7 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.065

Length

385 amino acids

Sequence
(BLAST)

001: MASTSLATLP SQLASPVRLR RRAALSSASR PHFLLHRATK GGSQCRLAVT CNAQAVAPTS FAQGTPVRPT SILVVGATGT LGRQVVRRAL DEGYDVRCLV
101: RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHAVID CATGRPEEPI RTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM EIKYCTEKFI
201: QDSGLDYIII RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RIAYMDTQDV ARLTFIAMRN EKANKKLMTF AGPRAWTTQE VITLCERLAG QDANVTTVPV
301: AVLRFTRQLT RCFQWTNDVA DRLAFSEVLS SDTVFSAPMN ETYQLLGVDG NDILSLEKYL QDYFTNILKK LKDLKAQSKQ TDIFF

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.