Factsheet for VIT_03s0038g03250.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g08550.t01
VIT_12s0028g01390.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35250.1	VIT_12s0028g01390.t01	AT1G06460.1	21798944
AT4G35250.1	VIT_08s0007g08550.t01	AT1G60080.1	21798944
AT4G35250.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	74.31	83.81
AT4G35250.1	Thale cress	plastid	79.85	80.25
Bra020809.1-P	Field mustard	plastid	79.09	79.49
CDY66582	Canola	plastid	79.09	79.49
CDY17531	Canola	plastid	78.84	79.24
Solyc01g112060.2.1	Tomato	plastid	76.07	78.24
PGSC0003DMT400048015	Potato	plastid	75.82	77.98
EES14101	Sorghum	plastid	75.31	77.66
KRH60638	Soybean	nucleus	77.08	77.27
Zm00001d031997_P001	Maize	plastid	74.56	76.88
Os08t0553800-03	Rice	plasma membrane, plastid	74.31	76.42
TraesCS7A01G276000.1	Wheat	plastid	74.56	76.29
TraesCS7B01G173700.1	Wheat	plastid	74.56	76.29
KRH51337	Soybean	cytosol, nucleus	67.0	76.22
TraesCS7D01G275900.1	Wheat	mitochondrion, plastid	74.81	69.39

Protein Annotations

MapMan:1.1.1.3.7.1	EntrezGene:100241886	wikigene:100241886	Gene3D:3.40.50.720	EMBL:AM469142	ProteinID:CAN77228
ProteinID:CAN77228.1	ProteinID:CBI37792	ProteinID:CBI37792.3	UniProt:D7U4X3	EMBL:FN596508	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009579	GO:GO:0009987	GO:GO:0010207	GO:GO:0015979	GO:GO:0016043	GO:GO:0019538
EntrezGene:LOC100241886	wikigene:LOC100241886	InterPro:NAD(P)-bd_dom_sf	InterPro:NmrA-like	PFAM:PF05368	PANTHER:PTHR14194
PANTHER:PTHR14194:SF36	SUPFAM:SSF51735	TIGR:TC54084	UniParc:UPI00015C88A1	ArrayExpress:VIT_03s0038g03250	EnsemblPlantsGene:VIT_03s0038g03250
EnsemblPlants:VIT_03s0038g03250.t01	unigene:Vvi.4187	RefSeq:XP_002278811	RefSeq:XP_002278811.1	:	:

Description

No Description!

Coordinates

chr3:+:2380407..2384590

Molecular Weight (calculated)

43813.0 Da

IEP (calculated)

8.547

GRAVY (calculated)

-0.053

Length

397 amino acids

Sequence
(BLAST)

001: MASKLPTQLA TARSLDSRGH HSKPKPSSLS WRTTLSSNGV VPSPLTSSNL SFNGLPKRSV LPVVRCSGAA VNLGPGTPVR STSVLVVGAT GTLGRQVVRR
101: ALDEGYDVRC LVRPRPAPAD FLRDWGAIVV NADLTKPETI PATLVGIHTV IDCATGRPEE PIKTVDWEGK VALIQCAKAM GIQKYVFFSI HNCDNHPEVP
201: LMEIKYCTEK FLQDIGLTHI IIRLCGFMQG LIGQYAVPIL EEKSVWGTDA TTRIAYMDTQ DIARLTFIAL RNEKINGKLL TFAGPRAWTT QEVITLCERL
301: AGQDANVTTV PVSVLKLTRQ LTRLFEWTND VADRLAFSEV LTSDTVFSTS MTETYDLLGV DPKDIVTLEK YLQDYFTNIL KKLKDLKAQS KQSDFYI

Best Arabidopsis Sequence Match ( AT4G35250.1 )
(BLAST)

001: MASLRLPAQL VTRGNLIHHN SSSSSSGRLS WRRSLTPENT IPLFPSSSSS SLNRERSIVV PVTCSAAAVN LAPGTPVRPT SILVVGATGT LGRQIVRRAL
101: DEGYDVRCLV RPRPAPADFL RDWGATVVNA DLSKPETIPA TLVGIHTVID CATGRPEEPI KTVDWEGKVA LIQCAKAMGI QKYVFYSIHN CDKHPEVPLM
201: EIKYCTEKFL QESGLNHITI RLCGFMQGLI GQYAVPILEE KSVWGTDAPT RVAYMDTQDI ARLTLIALRN EKINGKLLTF AGPRAWTTQE VITLCERLAG
301: QDANVTTVPV SVLRVTRQLT RFFQWTNDVA DRLAFSEVLS SDTVFSAPMT ETNSLLGVDQ KDMVTLEKYL QDYFSNILKK LKDLKAQSKQ SDIYF

Arabidopsis Description

HCF244 [Source:UniProtKB/TrEMBL;Acc:A0A178UXV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.