Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0008g06970.t01 | |
| VIT_17s0000g03690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G06460.1 | VIT_04s0008g06970.t01 | AT2G24860.1 | 21798944 |
| AT1G06460.1 | VIT_17s0000g03690.t01 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g055720.2.1 | Tomato | nucleus | 50.58 | 55.04 |
| CDY15579 | Canola | plastid | 31.27 | 53.29 |
| PGSC0003DMT400044530 | Potato | cytosol, nucleus, plastid | 51.35 | 53.2 |
| KRH14447 | Soybean | cytosol | 50.97 | 50.57 |
| KRH73706 | Soybean | cytosol | 50.97 | 50.57 |
| GSMUA_Achr3P03670_001 | Banana | plasma membrane | 37.07 | 37.35 |
| AT1G06460.1 | Thale cress | nucleus, plastid | 40.93 | 37.19 |
| Bra015501.1-P | Field mustard | plastid | 37.07 | 36.92 |
| CDX86521 | Canola | plastid | 40.15 | 35.99 |
| CDY06642 | Canola | plastid | 40.15 | 35.62 |
| CDY10200 | Canola | mitochondrion, plastid | 38.22 | 34.14 |
| Bra030653.1-P | Field mustard | plastid | 39.77 | 31.02 |
Protein Annotations
| EntrezGene:100267696 | wikigene:100267696 | Gene3D:2.60.40.790 | MapMan:35.2 | InterPro:A-crystallin/Hsp20_dom | ProteinID:CBI22043 |
| ProteinID:CBI22043.3 | UniProt:E0CTX7 | EMBL:FN595235 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 |
| EntrezGene:LOC100267696 | wikigene:LOC100267696 | PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR43670 | PANTHER:PTHR43670:SF5 |
| SUPFAM:SSF49764 | TIGR:TC53832 | TIGR:TC62740 | UniParc:UPI00015C9B74 | ArrayExpress:VIT_12s0028g01390 | EnsemblPlantsGene:VIT_12s0028g01390 |
| EnsemblPlants:VIT_12s0028g01390.t01 | unigene:Vvi.325 | RefSeq:XP_002282438 | RefSeq:XP_002282438.1 | : | : |
Description
No Description!
Coordinates
chr12:+:2044541..2046498
Molecular Weight (calculated)
28707.9 Da
IEP (calculated)
9.820
GRAVY (calculated)
-0.514
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQAARRRI NLIAGHFVPT DDLSASHVFP MNCSSSLNSA IRRCDNRTYF ARQGSSSQGC FMRQVSTEQG SSPQPGMPLK CSAYSNESSN TSQTPLFSKP
101: ARVEPNLSYV GSIQPLPQDF NLATEPAKFA RPSQRVSGSK QFRSKKKIHA SEGNGIEWSP RMDVAESGCN YVVTVELPGV GTNDIRVEIN SQNLIVMGKR
201: STQWWKVASC SNDSIPAYHK REILQGPYQV AWTLPFNANK DRVSAQFVDG FLQITIPKL
101: ARVEPNLSYV GSIQPLPQDF NLATEPAKFA RPSQRVSGSK QFRSKKKIHA SEGNGIEWSP RMDVAESGCN YVVTVELPGV GTNDIRVEIN SQNLIVMGKR
201: STQWWKVASC SNDSIPAYHK REILQGPYQV AWTLPFNANK DRVSAQFVDG FLQITIPKL
001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL
Arabidopsis Description
ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.