Factsheet for Solyc07g055720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063150.2.1
Solyc02g085950.2.1
Solyc03g034220.2.1
Solyc08g006620.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06460.1	Solyc08g006620.2.1	AT2G24860.1	21798944
AT1G06460.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT1G06460.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT1G06460.1	Solyc03g034220.2.1	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044530	Potato	cytosol, nucleus, plastid	93.28	88.8
VIT_12s0028g01390.t01	Wine grape	cytosol, plastid	55.04	50.58
CDY15579	Canola	plastid	29.41	46.05
KRH14447	Soybean	cytosol	44.12	40.23
KRH73706	Soybean	cytosol	44.12	40.23
AT1G06460.1	Thale cress	nucleus, plastid	41.6	34.74
Bra015501.1-P	Field mustard	plastid	36.13	33.08
GSMUA_Achr3P03670_001	Banana	plasma membrane	35.29	32.68
CDY06642	Canola	plastid	39.5	32.19
CDY10200	Canola	mitochondrion, plastid	37.4	30.69
CDX86521	Canola	plastid	36.97	30.45
Bra030653.1-P	Field mustard	plastid	38.24	27.41

Protein Annotations

EnsemblPlants:Solyc07g055720.2.1	EnsemblPlantsGene:Solyc07g055720.2	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	PANTHER:PTHR43670	PANTHER:PTHR43670:SF5	PFAM:PF00011	PFscan:PS01031	SUPFAM:SSF49764
UniParc:UPI000276AC35	UniProt:K4CGA5	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:+:63655500..63657426

Molecular Weight (calculated)

26532.4 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.517

Length

238 amino acids

Sequence
(BLAST)

001: MESQIVRRRV NMITAHLTAH DDISASATHL FPMSCSSSLN SAIPRRYDNR MNYARQSSSS QACFMRTSEQ GSCTESTAAF KASDYAKKSS RAFEGPMFSR
101: PANNCKHNGT VEEAPKFARP RFQLKERRNE LESNGSEWSP KMDVAESGSM YVVSIELPGV NINDIKVEVS HKSLIVSGNR STQCKVASYL NGLVSAYHKK
201: EIVQGPYRVF WPLPSNANKN RVSAEFVDGL LQITIPKL

Best Arabidopsis Sequence Match ( AT1G06460.1 )
(BLAST)

001: MEHESITARR RLAAFAAHFP ATSYDSASTA SLVPLNCSSS LNTVIQRCDN KISFARQASS EQGFFMRPAS PDDVLENLGM NLKNTVVRRG DNRLYFARQA
101: SSAQGFFMRQ ASTNERTIPH DAAASTKFSA TKTTGFDSSS PAYAAPHFSK PAKEDIFFPS LSPNLQKERP KLDLPKLANL GTVWSPRSNV AESTHSYVVA
201: IELPGASIND IRVEVDNTNL TVTGRRTSIC QKVDAGTKAS ILGYHKQEIL QGPFKVSWPL PSNVNKDNVS AEFMDGILRI VIPKL

Arabidopsis Description

ACD32.1Alpha-crystallin domain 32.1 [Source:UniProtKB/TrEMBL;Acc:Q208N7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.